MANIFEST.in
README.md
pyproject.toml
pyspoa.cpp
setup.py
pyspoa.egg-info/PKG-INFO
pyspoa.egg-info/SOURCES.txt
pyspoa.egg-info/dependency_links.txt
pyspoa.egg-info/not-zip-safe
pyspoa.egg-info/top_level.txt
src/.git
src/.gitignore
src/CMakeLists.txt
src/Config.cmake.in
src/LICENSE
src/README.md
src/.github/workflows/spoa.yml
src/include/spoa/alignment_engine.hpp
src/include/spoa/architectures.hpp
src/include/spoa/graph.hpp
src/include/spoa/spoa.hpp
src/src/alignment_engine.cpp
src/src/graph.cpp
src/src/main.cpp
src/src/simd_alignment_engine.hpp
src/src/simd_alignment_engine_dispatch.cpp
src/src/simd_alignment_engine_dispatcher.cpp
src/src/simd_alignment_engine_implementation.hpp
src/src/sisd_alignment_engine.cpp
src/src/sisd_alignment_engine.hpp
src/test/spoa_test.cpp
src/test/data/sample.fastq.gz