README.txt
setup.py
pySNPCall.egg-info/PKG-INFO
pySNPCall.egg-info/SOURCES.txt
pySNPCall.egg-info/dependency_links.txt
pySNPCall.egg-info/requires.txt
pySNPCall.egg-info/top_level.txt
pysnpcall/__init__.py
pysnpcall/alignment.py
pysnpcall/checkSNPs.py
pysnpcall/filterSNPs.py
pysnpcall/getHQSNPs.py
pysnpcall/getINDELs.py
pysnpcall/intraClonalSNPs.py
pysnpcall/obtainSNPMatrix.py
pysnpcall/parse_vcf.py
pysnpcall/pySNPCallingPipeline.py
pysnpcall/read_config.py
pysnpcall/scinet_alignment.py
pysnpcall/utilities.py
pysnpcall/write_vcf.py