__all__ = ['utilities', 'write_vcf', 'scinet_alignment', 'read_config', 'parse_vcf', 'obtainSNPMatrix', 'intraClonalSNPs', 'getINDELs', 'getHQSNPs', 'filterSNPs', 'checkSNPs', 'alignment', 'pySNPCallingPipeline']  
