MANIFEST.in
Makefile
README.md
setup.py
docs/_config.yml
docs/getting_started.md
docs/index.md
docs/pyslow5_api/pyslow5.md
docs/slow5_api/slow5.md
docs/slow5_api/slow5_aux_add.md
docs/slow5_api/slow5_aux_get.md
docs/slow5_api/slow5_aux_get_array.md
docs/slow5_api/slow5_aux_set.md
docs/slow5_api/slow5_aux_set_string.md
docs/slow5_api/slow5_close.md
docs/slow5_api/slow5_get.md
docs/slow5_api/slow5_get_next.md
docs/slow5_api/slow5_hdr_add.md
docs/slow5_api/slow5_hdr_get.md
docs/slow5_api/slow5_hdr_set.md
docs/slow5_api/slow5_hdr_write.md
docs/slow5_api/slow5_idx_create.md
docs/slow5_api/slow5_idx_load.md
docs/slow5_api/slow5_idx_unload.md
docs/slow5_api/slow5_internal.md
docs/slow5_api/slow5_low_level_api.md
docs/slow5_api/slow5_mt_api.md
docs/slow5_api/slow5_open.md
docs/slow5_api/slow5_rec_free.md
docs/slow5_api/slow5_rec_init.md
docs/slow5_api/slow5_set_press.md
docs/slow5_api/slow5_write.md
docs/slow5_api/internal/slow5_aux_meta_add_enum.md
docs/slow5_api/internal/slow5_get_aux_enum_labels.md
docs/slow5_api/internal/slow5_get_next_mem.md
docs/slow5_api/internal/slow5_open_with.md
docs/slow5_api/internal/slow5_rec_depress_parse.md
docs/slow5_api/low_level_api/slow5_aux_add_enum.md
docs/slow5_api/low_level_api/slow5_aux_get_enum.md
docs/slow5_api/low_level_api/slow5_decode.md
docs/slow5_api/low_level_api/slow5_encode.md
docs/slow5_api/low_level_api/slow5_get_aux_enum_labels.md
docs/slow5_api/low_level_api/slow5_get_aux_names.md
docs/slow5_api/low_level_api/slow5_get_hdr_keys.md
docs/slow5_api/low_level_api/slow5_get_next_bytes.md
docs/slow5_api/low_level_api/slow5_get_rids.md
docs/slow5_api/low_level_api/slow5_idx_load_with.md
docs/slow5_api/low_level_api/slow5_set_exit_condition.md
docs/slow5_api/low_level_api/slow5_set_log_level.md
docs/slow5_api/low_level_api/slow5_set_skip_rid.md
docs/slow5_api/low_level_api/slow5_write_bytes.md
docs/slow5_api/low_level_api/template.md
docs/slow5_api/mt_api/slow5_free_batch.md
docs/slow5_api/mt_api/slow5_free_mt.md
docs/slow5_api/mt_api/slow5_get_batch.md
docs/slow5_api/mt_api/slow5_get_next_batch.md
docs/slow5_api/mt_api/slow5_init_batch.md
docs/slow5_api/mt_api/slow5_init_mt.md
docs/slow5_api/mt_api/slow5_write_batch.md
include/slow5/slow5.h
include/slow5/slow5_defs.h
include/slow5/slow5_error.h
include/slow5/slow5_mt.h
include/slow5/slow5_press.h
include/slow5/klib/khash.h
include/slow5/klib/kvec.h
lib/.gitignore
pyslow5.egg-info/PKG-INFO
pyslow5.egg-info/SOURCES.txt
pyslow5.egg-info/dependency_links.txt
pyslow5.egg-info/requires.txt
pyslow5.egg-info/top_level.txt
python/.gitignore
python/README.md
python/example.py
python/pydebug.sh
python/pyslow5.c
python/pyslow5.h
python/pyslow5.pxd
python/pyslow5.pyx
python/pytest.sh
python/test.py
python/valgrind-python.supp
python/__pycache__/test.cpython-35.pyc
python/__pycache__/test.cpython-37.pyc
python/__pycache__/test.cpython-39.pyc
src/slow5.c
src/slow5_byte.h
src/slow5_extra.h
src/slow5_idx.c
src/slow5_idx.h
src/slow5_misc.c
src/slow5_misc.h
src/slow5_mt.c
src/slow5_press.c
src/klib/ksort.h
test/test_pyslow5_speed.py
thirdparty/streamvbyte/.gitignore
thirdparty/streamvbyte/AUTHORS
thirdparty/streamvbyte/CMakeLists.txt
thirdparty/streamvbyte/LICENSE
thirdparty/streamvbyte/Makefile
thirdparty/streamvbyte/README.md
thirdparty/streamvbyte/a.out
thirdparty/streamvbyte/include/streamvbyte.h
thirdparty/streamvbyte/include/streamvbyte_zigzag.h
thirdparty/streamvbyte/src/streamvbyte_arm_decode.c
thirdparty/streamvbyte/src/streamvbyte_arm_encode.c
thirdparty/streamvbyte/src/streamvbyte_decode.c
thirdparty/streamvbyte/src/streamvbyte_encode.c
thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_decode.h
thirdparty/streamvbyte/src/streamvbyte_shuffle_tables_encode.h
thirdparty/streamvbyte/src/streamvbyte_x64_decode.c
thirdparty/streamvbyte/src/streamvbyte_x64_encode.c
thirdparty/streamvbyte/src/streamvbyte_zigzag.c
thirdparty/streamvbyte16/libstreamvbyte16.a
thirdparty/streamvbyte16/streamvbyte16.o