.gitignore
CHANGELOG.rst
LICENSE
README.html
README.md
setup.py
docs/.gitignore
docs/Makefile
docs/conf.py
docs/development.rst
docs/example_sim.slim
docs/index.rst
docs/installation.rst
docs/introduction.rst
docs/metadata.rst
docs/migrants.slim
docs/python_api.rst
docs/rapid_adaptation.slim
docs/selection.slim
docs/tutorial.rst
docs/vignette_continuing.rst
docs/vignette_space.rst
docs/vignette_space.slim
docs/_static/pedigree0.png
docs/_static/pedigree1.png
docs/_static/pedigree2.png
docs/_static/pedigree3.png
docs/_static/pedigree_mutate.png
docs/_static/pedigree_recapitate.png
docs/_static/pedigree_simplify.png
docs/_static/pedigrees.ink.svg
docs/_static/recomb_rates.tsv
docs/_static/spatial_sim_ibd.png
docs/_static/spatial_sim_locations.png
pyslim/__init__.py
pyslim/_version.py
pyslim/provenance.py
pyslim/slim_metadata.py
pyslim/slim_tree_sequence.py
pyslim/util.py
pyslim.egg-info/PKG-INFO
pyslim.egg-info/SOURCES.txt
pyslim.egg-info/dependency_links.txt
pyslim.egg-info/not-zip-safe
pyslim.egg-info/requires.txt
pyslim.egg-info/top_level.txt
requirements/conda-minimal.txt
requirements/rtd.txt
tests/__init__.py
tests/test_annotation.py
tests/test_metadata.py
tests/test_provenance.py
tests/test_tree_sequence.py
tests/test_util.py
tests/examples/make_v3_tests.sh
tests/examples/recipe_WF.slim
tests/examples/recipe_WF.v3.0.trees
tests/examples/recipe_WF.v3.2.trees
tests/examples/recipe_WF.v3.3.1.trees
tests/examples/recipe_WF_early.slim
tests/examples/recipe_long_WF.slim
tests/examples/recipe_long_nonWF.slim
tests/examples/recipe_long_nucleotides.slim
tests/examples/recipe_nonWF.slim
tests/examples/recipe_nonWF.v3.0.trees
tests/examples/recipe_nonWF.v3.2.trees
tests/examples/recipe_nonWF.v3.3.1.trees
tests/examples/recipe_nonWF_early.slim
tests/examples/recipe_nonWF_selfing.slim
tests/examples/recipe_nucleotides.slim
tests/examples/recipe_record_everyone_WF_early.slim
tests/examples/recipe_record_everyone_WF_late.slim
tests/examples/recipe_record_everyone_nonWF_early.slim
tests/examples/recipe_record_everyone_nonWF_late.slim
tests/examples/recipe_roots.slim
tests/examples/restart_WF.slim
tests/examples/restart_msprime.slim
tests/examples/restart_nonWF.slim
tests/examples/restart_nucleotides.slim