Metadata-Version: 2.1
Name: pyroe
Version: 0.9.3
Summary: utilities of alevin-fry
Home-page: https://github.com/COMBINE-lab/pyroe
Author: Dongze He, Rob Patro
Author-email: dhe17@umd.edu, rob@cs.umd.edu
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pandas (<2.0.0,>=1.3.0)
Requires-Dist: pyranges (==0.0.120)
Requires-Dist: biopython (>=1.77)
Requires-Dist: packaging (>=21.0)
Requires-Dist: scanpy (>=1.8.2)

# pyroe

## About `pyroe`

[`Alevin-fry`](https://github.com/COMBINE-lab/alevin-fry) is a fast, accurate, and memory frugal quantification tool for preprocessing single-cell RNA-sequencing data. Detailed information can be found in the alevin-fry [pre-print](https://www.biorxiv.org/content/10.1101/2021.06.29.450377v2), and [paper](https://www.nature.com/articles/s41592-022-01408-3).

The `pyroe` package provides useful functions for analyzing single-cell or single-nucleus RNA-sequencing data using `alevin-fry`.  The documentation for `pyroe` has its own dedicated website.  Please visit the [ReadTheDocs pyroe website here](https://pyroe.readthedocs.io).
