# Pyrion

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Pyrion is a lightweight toolkit for comparative genomics focused on fast,
reliable manipulation of genome annotations and alignments.

It provides efficient abstractions for genomic intervals, genome alignment
chains, and sequence access, supporting formats such as BED, chain, 2bit,
FASTA, genePred, and GTF.

Development plans and open tasks are tracked in the [issue tracker](https://github.com/kirilenkobm/pyrion/issues).

## Installation

```bash
pip install pyrion
```

## Quick Start

See [demo.ipynb](demo.ipynb) for quick examples.

For a more advanced practical example, pls see [TOGA_mini](https://github.com/kirilenkobm/TOGA_mini) repo.

## API Reference

See [API_REFERENCE.md](API_REFERENCE.md) for the complete API documentation.

## License

MIT License - see [LICENSE](LICENSE) file for details.
