API_REFERENCE.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
csrc/bed12parser.c
csrc/chainparser.c
csrc/faiparser.c
csrc/fastaparser.c
csrc/gtfparser.c
csrc/narrowbedparser.c
pyrion/__init__.py
pyrion/_bed12parser.pyi
pyrion/_chainparser.pyi
pyrion/_faiparser.pyi
pyrion/_fastaparser.pyi
pyrion/_gtfparser.pyi
pyrion/_narrowbedparser.pyi
pyrion/_version.py
pyrion/config.py
pyrion/constants.py
pyrion/core_types.py
pyrion/py.typed
pyrion/visualization.py
pyrion.egg-info/PKG-INFO
pyrion.egg-info/SOURCES.txt
pyrion.egg-info/dependency_links.txt
pyrion.egg-info/requires.txt
pyrion.egg-info/top_level.txt
pyrion/core/__init__.py
pyrion/core/amino_acid_auxiliary.py
pyrion/core/amino_acid_sequences.py
pyrion/core/canonizer.py
pyrion/core/codons.py
pyrion/core/fai.py
pyrion/core/gene_data.py
pyrion/core/genes.py
pyrion/core/genes_auxiliary.py
pyrion/core/genome_alignment.py
pyrion/core/genome_alignment_auxiliary.py
pyrion/core/intervals.py
pyrion/core/intervals_auxiliary.py
pyrion/core/nucleotide_sequences.py
pyrion/core/sequences_auxiliary.py
pyrion/core/sequences_collection.py
pyrion/core/strand.py
pyrion/core/translation.py
pyrion/io/__init__.py
pyrion/io/bed.py
pyrion/io/chain.py
pyrion/io/fai.py
pyrion/io/fasta.py
pyrion/io/gene_data.py
pyrion/io/genepred.py
pyrion/io/gtf.py
pyrion/io/twobit.py
pyrion/ops/__init__.py
pyrion/ops/chain_serialization.py
pyrion/ops/chain_slicing.py
pyrion/ops/chains.py
pyrion/ops/data_consistency.py
pyrion/ops/entity_ops.py
pyrion/ops/genes.py
pyrion/ops/interval_collection_ops.py
pyrion/ops/interval_ops.py
pyrion/ops/interval_serialization.py
pyrion/ops/interval_slicing.py
pyrion/ops/intervals.py
pyrion/ops/sequence_serialization.py
pyrion/ops/transcript_serialization.py
pyrion/ops/transcript_slicing.py
pyrion/ops/transformations.py
pyrion/utils/__init__.py
pyrion/utils/amino_acid_encoding.py
pyrion/utils/encoding.py
pyrion/utils/numpy_utils.py
tests/test_chain_gzip.py
tests/test_chain_slicing.py
tests/test_chains.py
tests/test_chains_comprehensive.py
tests/test_core_properties_and_utilities.py
tests/test_entity_ops.py
tests/test_fai_generation.py
tests/test_fasta_io.py
tests/test_genes_and_consistency.py
tests/test_gtf_io.py
tests/test_high_priority_modules.py
tests/test_interval_collection_ops.py
tests/test_interval_ops.py
tests/test_interval_slicing.py
tests/test_intervals.py
tests/test_sequences.py
tests/test_serialization.py