# Pyrion

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Tools and abstractions for comparative genomics. Reliable, fast, and minimal-dependency tools 
for common genomics tasks without unnecessary overhead.

Pyrion includes tools for manipulating genomic intervals, genome alignments, and sequences.
It handles common formats like BED (6 or 12), chain, 2bit, and FASTA, and can also parse genePred and GTF annotations.

Work in progress: [plans](TODO.md).

## Installation

```bash
pip install pyrion
```

## Quick Start

See [demo.ipynb](demo.ipynb) for quick examples.

For a more advanced practical example, pls see [TOGA_mini](https://github.com/kirilenkobm/TOGA_mini) repo.

## API Reference

See [API_REFERENCE.md](API_REFERENCE.md) for the complete API documentation.

## License

MIT License - see [LICENSE](LICENSE) file for details.
