Metadata-Version: 2.4
Name: pyrion
Version: 0.1.3
Summary: A fast and efficient bioinformatics library for genomic data processing
Author: Bogdan M. Kirilenko
Maintainer: Bogdan M. Kirilenko
License-Expression: MIT
Project-URL: Homepage, https://github.com/kirilenkobm/pyrion
Project-URL: Repository, https://github.com/kirilenkobm/pyrion
Project-URL: Bug Reports, https://github.com/kirilenkobm/pyrion/issues
Project-URL: Documentation, https://github.com/kirilenkobm/pyrion
Project-URL: Changelog, https://github.com/kirilenkobm/pyrion/releases
Keywords: bioinformatics,genomics,sequence-analysis,comparative-genomics,numpy,alignment,gene-annotation,liftover
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Programming Language :: Python :: 3.13
Classifier: Operating System :: OS Independent
Classifier: Typing :: Typed
Requires-Python: >=3.9
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy>=1.21.0
Requires-Dist: py2bit>=0.3.0
Requires-Dist: numba>=0.56.0
Provides-Extra: test
Requires-Dist: pytest>=7.0; extra == "test"
Requires-Dist: pytest-cov>=4.0; extra == "test"
Requires-Dist: pytest-xdist>=3.0; extra == "test"
Provides-Extra: visualization
Requires-Dist: matplotlib>=3.5.0; extra == "visualization"
Provides-Extra: dev
Requires-Dist: pytest>=7.0; extra == "dev"
Requires-Dist: pytest-cov>=4.0; extra == "dev"
Requires-Dist: black>=23.0; extra == "dev"
Requires-Dist: ruff>=0.1.0; extra == "dev"
Requires-Dist: mypy>=1.0; extra == "dev"
Requires-Dist: pre-commit>=3.0; extra == "dev"
Requires-Dist: jupyterlab>=4.0; extra == "dev"
Requires-Dist: matplotlib>=3.5.0; extra == "dev"
Dynamic: license-file

# Pyrion

![PyPI version](https://img.shields.io/badge/version-0.1.2-blue)
![Python](https://img.shields.io/badge/python-3.9%2B-blue)
![License](https://img.shields.io/badge/license-MIT-green)

Tools and abstractions for comparative genomics. Reliable, fast, and minimal-dependency tools 
for common genomics tasks without unnecessary overhead.

Work in progress.

## Installation

```bash
pip install pyrion
```

## Quick Start

See [demo.ipynb](demo.ipynb) for quick examples.

For a more advanced practical example, pls see [TOGA_mini](https://github.com/kirilenkobm/TOGA_mini) repo.

## API Reference

See [API_REFERENCE.md](API_REFERENCE.md) for the complete API documentation.

## License

MIT License - see [LICENSE](LICENSE) file for details.
