LICENSE
README.md
setup.py
pyranges/__init__.py
pyranges/data.py
pyranges/genomicfeatures.py
pyranges/get_fasta.py
pyranges/helpers.py
pyranges/multioverlap.py
pyranges/multithreaded.py
pyranges/out.py
pyranges/pyranges_main.py
pyranges/readers.py
pyranges/statistics.py
pyranges/stats.py
pyranges/subset.py
pyranges/tostring.py
pyranges/tostring2.py
pyranges/version.py
pyranges.egg-info/PKG-INFO
pyranges.egg-info/SOURCES.txt
pyranges.egg-info/dependency_links.txt
pyranges.egg-info/requires.txt
pyranges.egg-info/top_level.txt
pyranges/example_data/aorta.bed
pyranges/example_data/aorta2.bed
pyranges/example_data/bw.bw
pyranges/example_data/chipseq.bed
pyranges/example_data/chipseq_background.bed
pyranges/example_data/chromsizes.bed
pyranges/example_data/control.bam
pyranges/example_data/control.bam.bai
pyranges/example_data/cpg.bed
pyranges/example_data/ensembl.gtf
pyranges/example_data/ensembl_human.gtf.gz
pyranges/example_data/exons.bed
pyranges/example_data/f1.bed
pyranges/example_data/f2.bed
pyranges/example_data/gencode_human.gtf.gz
pyranges/example_data/lamina.bed
pyranges/example_data/ucsc_human.bed.gz
pyranges/methods/__init__.py
pyranges/methods/attr.py
pyranges/methods/boundaries.py
pyranges/methods/call.py
pyranges/methods/cluster.py
pyranges/methods/concat.py
pyranges/methods/coverage.py
pyranges/methods/drop.py
pyranges/methods/drop_duplicates.py
pyranges/methods/getitem.py
pyranges/methods/init.py
pyranges/methods/insert.py
pyranges/methods/intersection.py
pyranges/methods/itergrs.py
pyranges/methods/join.py
pyranges/methods/k_nearest.py
pyranges/methods/max_disjoint.py
pyranges/methods/merge.py
pyranges/methods/nearest.py
pyranges/methods/new_position.py
pyranges/methods/sort.py
pyranges/methods/spliced_subsequence.py
pyranges/methods/split.py
pyranges/methods/statistics.py
pyranges/methods/subsequence.py
pyranges/methods/subtraction.py
pyranges/methods/summary.py
pyranges/methods/to_rle.py
pyranges/methods/windows.py
tests/__init__.py
tests/conftest.py
tests/helpers.py
tests/hypothesis_helper.py
tests/k_nearest.py
tests/statistics.py
tests/test_binary.py
tests/test_change_chromosome_custom.py
tests/test_concat.py
tests/test_count_overlaps.py
tests/test_do_not_error.py
tests/test_genomicfeatures.py
tests/test_getset_attr.py
tests/test_guessers.py
tests/test_io.py
tests/test_pickle.py
tests/test_stranded.py
tests/test_unary.py
tests/windows/__init__.py
tests/windows/test_windows.py