.coveragerc
.gitignore
AUTHORS.TXT
CONTRIBUTING.rst
LICENSE
MANIFEST.in
Makefile
README.rst
pyproject.toml
requirements_dev.txt
setup.cfg
setup.py
.github/workflows/pypi_cd.yml
.github/workflows/tox_ci.yml
docs/Makefile
docs/make.bat
docs/requirements.txt
docs/source/advanced_usage.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/examples.rst
docs/source/ident_parsers.rst
docs/source/index.rst
docs/source/introduction.rst
docs/source/modules.rst
docs/source/quick_start.rst
docs/source/unify.rst
example_scripts/unify_msamanda.py
example_scripts/unify_msfragger.py
pyProtista.egg-info/PKG-INFO
pyProtista.egg-info/SOURCES.txt
pyProtista.egg-info/dependency_links.txt
pyProtista.egg-info/requires.txt
pyProtista.egg-info/top_level.txt
pyprotista/__init__.py
pyprotista/unify.py
pyprotista/utils.py
pyprotista/version.txt
pyprotista/engine_parsers/__init__.py
pyprotista/engine_parsers/base_parser.py
pyprotista/engine_parsers/misc.py
pyprotista/engine_parsers/ident/__init__.py
pyprotista/engine_parsers/ident/comet_2020_01_4_parser.py
pyprotista/engine_parsers/ident/dummy_parser.py
pyprotista/engine_parsers/ident/ident_base_parser.py
pyprotista/engine_parsers/ident/mascot_2_6_2_parser.py
pyprotista/engine_parsers/ident/msamanda_2_parser.py
pyprotista/engine_parsers/ident/msfragger_3_parser.py
pyprotista/engine_parsers/ident/msgfplus_2021_03_22_parser.py
pyprotista/engine_parsers/ident/omssa_2_1_9_parser.py
pyprotista/engine_parsers/ident/xtandem_alanine.py
pyprotista/engine_parsers/quant/__init__.py
pyprotista/engine_parsers/quant/flash_lfq_1_2_0_parser.py
pyprotista/engine_parsers/quant/quant_base_parser.py
tests/conftest.py
tests/test_engine_parser_base_parser.py
tests/test_engine_parser_ident_base_parser.py
tests/test_engine_parser_quant_base_parser.py
tests/test_unify.py
tests/data/BSA.fasta
tests/data/BSA1_comet_2020_01_4.mzid
tests/data/BSA1_mascot_2_6_2.dat
tests/data/BSA1_msamanda_2_0_0_17442.csv
tests/data/BSA1_msfragger_3.tsv
tests/data/BSA1_msgfplus_2021_03_22.mzid
tests/data/BSA1_msgfplus_2021_03_22_unknown_mod.mzid
tests/data/BSA1_ursgal_lookup.csv
tests/data/BSA1_xtandem_alanine.xml
tests/data/_ursgal_lookup.csv
tests/data/custom_mod.xml
tests/data/flash_lfq_1_2_0_quantified_peaks.tsv
tests/data/human_ecoli_test_target_decoy.fasta
tests/data/multiple_psms_xtandem.xml
tests/data/test_Creinhardtii_QE_pH11_msfragger_3.tsv
tests/data/test_Creinhardtii_QE_pH11_omssa_2_1_9.csv
tests/data/test_Creinhardtii_QE_pH11_xtandem_alanine.xml
tests/data/test_Creinhardtii_target_decoy.fasta
tests/data/mapping_data/trunc_comet.mzid
tests/data/mapping_data/trunc_fasta.protein.faa
tests/data/mapping_data/trunc_meta.spectra_meta.csv
tests/data/mapping_data/trunc_msfragger.tsv
tests/data/mapping_data/trunc_msgfplus.mzid
tests/data/mapping_data/trunc_omssa.csv
tests/data/mapping_data/trunc_xtandem.xml
tests/ident/test_engine_parser_comet_2020_01_04.py
tests/ident/test_engine_parser_mascot_2_6_2.py
tests/ident/test_engine_parser_msamanda.py
tests/ident/test_engine_parser_msfragger_3.py
tests/ident/test_engine_parser_msgfplus_2021_03_22.py
tests/ident/test_engine_parser_omssa.py
tests/ident/test_engine_parser_xtandem_alanine.py
tests/mapping/test_TMTpro_mapping.py
tests/quant/test_engine_parser_flash_lfq_1_2_0.py