"""
Utilities module for PyPLogo
Contains utility functions for parsing, formatting, and handling protein data
"""

from .parsers import parse_fasta, validate_sequence, calculate_sequence_stats
from .formatters import (format_sequence, format_secondary_structure, 
                       format_confidence_scores, create_sequence_chunks,
                       calculate_sequence_position, format_legend,
                       normalize_confidence_scores)

__all__ = [
    'parse_fasta',
    'validate_sequence',
    'calculate_sequence_stats',
    'format_sequence',
    'format_secondary_structure',
    'format_confidence_scores',
    'create_sequence_chunks',
    'calculate_sequence_position',
    'format_legend',
    'normalize_confidence_scores'
]