README.md
setup.py
pypka/__init__.py
pypka/__main__.py
pypka/addHtaut_CHARMM
pypka/addHtaut_GROMOS
pypka/checksites.py
pypka/cleaning.py
pypka/cli.py
pypka/concurrency.py
pypka/config.py
pypka/constants.py
pypka/ffconverter.py
pypka/formats.py
pypka/log.py
pypka/mc.cpython-35m-x86_64-linux-gnu.so
pypka/mc.cpython-36m-x86_64-linux-gnu.so
pypka/mc.cpython-37m-x86_64-linux-gnu.so
pypka/mc.cpython-38-x86_64-linux-gnu.so
pypka/mc_setup.py
pypka/molecule.py
pypka/pypka.py
pypka/tautomer.py
pypka/titsite.py
pypka.egg-info/PKG-INFO
pypka.egg-info/SOURCES.txt
pypka.egg-info/dependency_links.txt
pypka.egg-info/entry_points.txt
pypka.egg-info/requires.txt
pypka.egg-info/top_level.txt
pypka/G54A7/DataBaseT.crg
pypka/G54A7/DataBaseT.siz
pypka/G54A7/DataBaseT_15.siz
pypka/G54A7/DataBaseT_2.siz
pypka/G54A7/DataBaseT_5.siz
pypka/G54A7/DataBaseT_min.siz
pypka/G54A7/DataBaseT_old.siz
pypka/G54A7/DataBaseT_zero.siz
pypka/G54A7/c612_radius.py
pypka/G54A7/c612_radius_old.py
pypka/G54A7/ffG53a6pHnb.itp
pypka/G54A7/ffG54a7pHt.rtp
pypka/G54A7/ffG54a7pHtnb.itp
pypka/G54A7/sts/ACAall.st
pypka/G54A7/sts/ACAtau1.st
pypka/G54A7/sts/ACAtau2.st
pypka/G54A7/sts/ACAtau3.st
pypka/G54A7/sts/ACAtau4.st
pypka/G54A7/sts/ARGall.st
pypka/G54A7/sts/ARGtau1.st
pypka/G54A7/sts/ARGtau2.st
pypka/G54A7/sts/ARGtau3.st
pypka/G54A7/sts/ARGtau4.st
pypka/G54A7/sts/ASPall.st
pypka/G54A7/sts/ASPtau1.st
pypka/G54A7/sts/ASPtau2.st
pypka/G54A7/sts/ASPtau3.st
pypka/G54A7/sts/ASPtau4.st
pypka/G54A7/sts/BALtau1.st
pypka/G54A7/sts/BALtau2.st
pypka/G54A7/sts/BALtau3.st
pypka/G54A7/sts/CLall.st
pypka/G54A7/sts/CLtau1.st
pypka/G54A7/sts/CLtau2.st
pypka/G54A7/sts/CTALAall.st
pypka/G54A7/sts/CTALAtau1.st
pypka/G54A7/sts/CTALAtau2.st
pypka/G54A7/sts/CTALAtau3.st
pypka/G54A7/sts/CTALAtau4.st
pypka/G54A7/sts/CTRtau1.st
pypka/G54A7/sts/CTRtau2.st
pypka/G54A7/sts/CTRtau3.st
pypka/G54A7/sts/CTRtau4.st
pypka/G54A7/sts/CYSall.st
pypka/G54A7/sts/CYStau1.st
pypka/G54A7/sts/CYStau2.st
pypka/G54A7/sts/CYStau3.st
pypka/G54A7/sts/DAtau1.st
pypka/G54A7/sts/DAtau2.st
pypka/G54A7/sts/DXtau1.st
pypka/G54A7/sts/DXtau2.st
pypka/G54A7/sts/GLUall.st
pypka/G54A7/sts/GLUtau1.st
pypka/G54A7/sts/GLUtau2.st
pypka/G54A7/sts/GLUtau3.st
pypka/G54A7/sts/GLUtau4.st
pypka/G54A7/sts/HEMall.st
pypka/G54A7/sts/HIStau1.st
pypka/G54A7/sts/HIStau2.st
pypka/G54A7/sts/LYSall.st
pypka/G54A7/sts/LYStau1.st
pypka/G54A7/sts/LYStau2.st
pypka/G54A7/sts/LYStau3.st
pypka/G54A7/sts/MTYtau1.st
pypka/G54A7/sts/MTYtau2.st
pypka/G54A7/sts/NTALAall.st
pypka/G54A7/sts/NTALAtau1.st
pypka/G54A7/sts/NTALAtau2.st
pypka/G54A7/sts/NTALAtau3.st
pypka/G54A7/sts/NTPROall.st
pypka/G54A7/sts/NTPROtau1.st
pypka/G54A7/sts/NTPROtau2.st
pypka/G54A7/sts/NTRtau1.st
pypka/G54A7/sts/NTRtau2.st
pypka/G54A7/sts/NTRtau3.st
pypka/G54A7/sts/OLAall.st
pypka/G54A7/sts/OLAtau1.st
pypka/G54A7/sts/OLAtau2.st
pypka/G54A7/sts/OLAtau3.st
pypka/G54A7/sts/OLAtau4.st
pypka/G54A7/sts/PAtau1.st
pypka/G54A7/sts/PAtau2.st
pypka/G54A7/sts/PAtau3.st
pypka/G54A7/sts/PAtau4.st
pypka/G54A7/sts/PDtau1.st
pypka/G54A7/sts/PDtau2.st
pypka/G54A7/sts/PDtau3.st
pypka/G54A7/sts/PDtau4.st
pypka/G54A7/sts/PIXtau1.st
pypka/G54A7/sts/PIXtau2.st
pypka/G54A7/sts/PIXtau3.st
pypka/G54A7/sts/PIXtau4.st
pypka/G54A7/sts/PIXtau5.st
pypka/G54A7/sts/PIXtau6.st
pypka/G54A7/sts/PJXtau1.st
pypka/G54A7/sts/PJXtau2.st
pypka/G54A7/sts/SERtau1.st
pypka/G54A7/sts/SERtau2.st
pypka/G54A7/sts/SERtau3.st
pypka/G54A7/sts/THRtau1.st
pypka/G54A7/sts/THRtau2.st
pypka/G54A7/sts/THRtau3.st
pypka/G54A7/sts/TYRall.st
pypka/G54A7/sts/TYRtau1.st
pypka/G54A7/sts/TYRtau2.st
pypka/delphi4py/__init__.py
pypka/delphi4py/delphi4py.py
pypka/delphi4py/readFiles/__init__.py
pypka/delphi4py/readFiles/memalloc.so
pypka/delphi4py/readFiles/readFiles.cpython-35m-x86_64-linux-gnu.so
pypka/delphi4py/readFiles/readFiles.cpython-36m-x86_64-linux-gnu.so
pypka/delphi4py/readFiles/readFiles.cpython-37m-x86_64-linux-gnu.so
pypka/delphi4py/readFiles/readFiles.cpython-38-x86_64-linux-gnu.so
pypka/delphi4py/rundelphi/__init__.py
pypka/delphi4py/rundelphi/rundelphi.cpython-35m-x86_64-linux-gnu.so
pypka/delphi4py/rundelphi/rundelphi.cpython-36m-x86_64-linux-gnu.so
pypka/delphi4py/rundelphi/rundelphi.cpython-37m-x86_64-linux-gnu.so
pypka/delphi4py/rundelphi/rundelphi.cpython-38-x86_64-linux-gnu.so
pypka/example/__init__.py
pypka/pdb2pqr/AUTHORS
pypka/pdb2pqr/AppService_client.pyc
pypka/pdb2pqr/AppService_services.pyc
pypka/pdb2pqr/AppService_services_types.pyc
pypka/pdb2pqr/AppService_types.pyc
pypka/pdb2pqr/COPYING
pypka/pdb2pqr/ChangeLog.md
pypka/pdb2pqr/NEWS
pypka/pdb2pqr/README.md
pypka/pdb2pqr/apbs_cgi.cgi
pypka/pdb2pqr/index.html
pypka/pdb2pqr/main.pyc
pypka/pdb2pqr/main_cgi.pyc
pypka/pdb2pqr/pdb2pqr.cgi
pypka/pdb2pqr/pdb2pqr.css
pypka/pdb2pqr/pdb2pqr.py
pypka/pdb2pqr/pdb2pqr.pyc
pypka/pdb2pqr/pka.pyc
pypka/pdb2pqr/querystatus.cgi
pypka/pdb2pqr/visualize.cgi
pypka/pdb2pqr/ZSI/LBNLCopyright
pypka/pdb2pqr/ZSI/ServiceContainer.pyc
pypka/pdb2pqr/ZSI/ServiceProxy.pyc
pypka/pdb2pqr/ZSI/TC.pyc
pypka/pdb2pqr/ZSI/TCapache.pyc
pypka/pdb2pqr/ZSI/TCcompound.pyc
pypka/pdb2pqr/ZSI/TCnumbers.pyc
pypka/pdb2pqr/ZSI/TCtimes.pyc
pypka/pdb2pqr/ZSI/__init__.pyc
pypka/pdb2pqr/ZSI/address.pyc
pypka/pdb2pqr/ZSI/auth.pyc
pypka/pdb2pqr/ZSI/client.pyc
pypka/pdb2pqr/ZSI/digest_auth.pyc
pypka/pdb2pqr/ZSI/dispatch.pyc
pypka/pdb2pqr/ZSI/fault.pyc
pypka/pdb2pqr/ZSI/parse.pyc
pypka/pdb2pqr/ZSI/resolvers.pyc
pypka/pdb2pqr/ZSI/schema.pyc
pypka/pdb2pqr/ZSI/typeinterpreter.pyc
pypka/pdb2pqr/ZSI/version.pyc
pypka/pdb2pqr/ZSI/writer.pyc
pypka/pdb2pqr/dat/AA.xml
pypka/pdb2pqr/dat/AMBER.DAT
pypka/pdb2pqr/dat/AMBER.names
pypka/pdb2pqr/dat/CHARMM.DAT
pypka/pdb2pqr/dat/CHARMM.names
pypka/pdb2pqr/dat/GROMOS.DAT
pypka/pdb2pqr/dat/GROMOS.names
pypka/pdb2pqr/dat/GROMOS1.DAT
pypka/pdb2pqr/dat/GROMOS1.names
pypka/pdb2pqr/dat/GROMOS2.DaT
pypka/pdb2pqr/dat/GROMOS_.names
pypka/pdb2pqr/dat/GROMOS_new.DAT
pypka/pdb2pqr/dat/GROMOS_new.names
pypka/pdb2pqr/dat/HYDROGENS.xml
pypka/pdb2pqr/dat/NA.xml
pypka/pdb2pqr/dat/PARSE.DAT
pypka/pdb2pqr/dat/PARSE.names
pypka/pdb2pqr/dat/PATCHES.xml
pypka/pdb2pqr/dat/PEOEPB.DAT
pypka/pdb2pqr/dat/PEOEPB.names
pypka/pdb2pqr/dat/SWANSON.DAT
pypka/pdb2pqr/dat/SWANSON.names
pypka/pdb2pqr/dat/TOPOLOGY.xml
pypka/pdb2pqr/dat/TYL06.DAT
pypka/pdb2pqr/dat/TYL06.names
pypka/pdb2pqr/dat/database.crg
pypka/pdb2pqr/dat/database.crgsiz
pypka/pdb2pqr/dat/database.siz
pypka/pdb2pqr/dat/ff2dat.py_script
pypka/pdb2pqr/dat/ffG54a7pHt.rtp
pypka/pdb2pqr/extensions/__init__.pyc
pypka/pdb2pqr/extensions/chi.pyc
pypka/pdb2pqr/extensions/contact.pyc
pypka/pdb2pqr/extensions/hbond.pyc
pypka/pdb2pqr/extensions/newresinter.pyc
pypka/pdb2pqr/extensions/rama.pyc
pypka/pdb2pqr/extensions/resinter.pyc
pypka/pdb2pqr/extensions/salt.pyc
pypka/pdb2pqr/extensions/summary.pyc
pypka/pdb2pqr/src/__init__.pyc
pypka/pdb2pqr/src/aa.pyc
pypka/pdb2pqr/src/aconf.pyc
pypka/pdb2pqr/src/definitions.pyc
pypka/pdb2pqr/src/errors.pyc
pypka/pdb2pqr/src/forcefield.pyc
pypka/pdb2pqr/src/hydrogens.pyc
pypka/pdb2pqr/src/inputgen.pyc
pypka/pdb2pqr/src/na.pyc
pypka/pdb2pqr/src/pdb.pyc
pypka/pdb2pqr/src/protein.pyc
pypka/pdb2pqr/src/psize.pyc
pypka/pdb2pqr/src/quatfit.pyc
pypka/pdb2pqr/src/routines.pyc
pypka/pdb2pqr/src/server.pyc
pypka/pdb2pqr/src/structures.pyc
pypka/pdb2pqr/src/topology.pyc
pypka/pdb2pqr/src/utilities.pyc
pypka/tests/__init__.py
pypka/tests/test.py
pypka/tests/builder/__init__.py
pypka/tests/builder/check_diffs.py