LICENSE
MANIFEST.in
README.md
pyproject.toml
./ppt_venv/bin/rst2html.py
./ppt_venv/bin/rst2html4.py
./ppt_venv/bin/rst2html5.py
./ppt_venv/bin/rst2latex.py
./ppt_venv/bin/rst2man.py
./ppt_venv/bin/rst2odt.py
./ppt_venv/bin/rst2odt_prepstyles.py
./ppt_venv/bin/rst2pseudoxml.py
./ppt_venv/bin/rst2s5.py
./ppt_venv/bin/rst2xetex.py
./ppt_venv/bin/rst2xml.py
./ppt_venv/bin/rstpep2html.py
./src/pyphetools/__init__.py
./src/pyphetools/creation/__init__.py
./src/pyphetools/creation/abstract_encoder.py
./src/pyphetools/creation/age_column_mapper.py
./src/pyphetools/creation/age_isoformater.py
./src/pyphetools/creation/age_of_death_mapper.py
./src/pyphetools/creation/allelic_requirement.py
./src/pyphetools/creation/case_encoder.py
./src/pyphetools/creation/case_template_encoder.py
./src/pyphetools/creation/citation.py
./src/pyphetools/creation/cohort_encoder.py
./src/pyphetools/creation/column_mapper.py
./src/pyphetools/creation/constant_column_mapper.py
./src/pyphetools/creation/constants.py
./src/pyphetools/creation/disease.py
./src/pyphetools/creation/disease_id_column_mapper.py
./src/pyphetools/creation/hgvs_variant.py
./src/pyphetools/creation/hp_term.py
./src/pyphetools/creation/hpo_cr.py
./src/pyphetools/creation/hpo_exact_cr.py
./src/pyphetools/creation/hpo_parser.py
./src/pyphetools/creation/individual.py
./src/pyphetools/creation/metadata.py
./src/pyphetools/creation/mixed_cohort_encoder.py
./src/pyphetools/creation/option_column_mapper.py
./src/pyphetools/creation/sex_column_mapper.py
./src/pyphetools/creation/simple_column_mapper.py
./src/pyphetools/creation/structural_variant.py
./src/pyphetools/creation/thresholded_column_mapper.py
./src/pyphetools/creation/thresholder.py
./src/pyphetools/creation/variant.py
./src/pyphetools/creation/variant_column_mapper.py
./src/pyphetools/creation/variant_manager.py
./src/pyphetools/creation/variant_validator.py
./src/pyphetools/validation/__init__.py
./src/pyphetools/validation/cohort_validator.py
./src/pyphetools/validation/content_validator.py
./src/pyphetools/validation/ontology_qc.py
./src/pyphetools/validation/phenopacket_validator.py
./src/pyphetools/validation/validated_individual.py
./src/pyphetools/validation/validation_result.py
./src/pyphetools/visualization/__init__.py
./src/pyphetools/visualization/detailed_suppl_table.py
./src/pyphetools/visualization/focus_count_table.py
./src/pyphetools/visualization/hpo_category.py
./src/pyphetools/visualization/hpoa_table_creator.py
./src/pyphetools/visualization/html_table_generator.py
./src/pyphetools/visualization/individual_table.py
./src/pyphetools/visualization/phenopacket_charts.py
./src/pyphetools/visualization/phenopacket_ingestor.py
./src/pyphetools/visualization/phenopacket_table.py
./src/pyphetools/visualization/qc_visualizer.py
./src/pyphetools/visualization/simple_age.py
./src/pyphetools/visualization/simple_patient.py
./src/pyphetools/visualization/simple_variant.py
./src/pyphetools/visualization/term_count.py
./src/pyphetools/visualization/variant_visualizer.py
pyphetools.egg-info/PKG-INFO
pyphetools.egg-info/SOURCES.txt
pyphetools.egg-info/dependency_links.txt
pyphetools.egg-info/not-zip-safe
pyphetools.egg-info/requires.txt
pyphetools.egg-info/top_level.txt
src/pyphetools/__init__.py
src/pyphetools/creation/__init__.py
src/pyphetools/creation/abstract_encoder.py
src/pyphetools/creation/age_column_mapper.py
src/pyphetools/creation/age_isoformater.py
src/pyphetools/creation/age_of_death_mapper.py
src/pyphetools/creation/allelic_requirement.py
src/pyphetools/creation/case_encoder.py
src/pyphetools/creation/case_template_encoder.py
src/pyphetools/creation/citation.py
src/pyphetools/creation/cohort_encoder.py
src/pyphetools/creation/column_mapper.py
src/pyphetools/creation/constant_column_mapper.py
src/pyphetools/creation/constants.py
src/pyphetools/creation/disease.py
src/pyphetools/creation/disease_id_column_mapper.py
src/pyphetools/creation/hgvs_variant.py
src/pyphetools/creation/hp_term.py
src/pyphetools/creation/hpo_cr.py
src/pyphetools/creation/hpo_exact_cr.py
src/pyphetools/creation/hpo_parser.py
src/pyphetools/creation/individual.py
src/pyphetools/creation/metadata.py
src/pyphetools/creation/mixed_cohort_encoder.py
src/pyphetools/creation/option_column_mapper.py
src/pyphetools/creation/sex_column_mapper.py
src/pyphetools/creation/simple_column_mapper.py
src/pyphetools/creation/structural_variant.py
src/pyphetools/creation/thresholded_column_mapper.py
src/pyphetools/creation/thresholder.py
src/pyphetools/creation/variant.py
src/pyphetools/creation/variant_column_mapper.py
src/pyphetools/creation/variant_manager.py
src/pyphetools/creation/variant_validator.py
src/pyphetools/creation/data/thresholds.tsv
src/pyphetools/validation/__init__.py
src/pyphetools/validation/cohort_validator.py
src/pyphetools/validation/content_validator.py
src/pyphetools/validation/ontology_qc.py
src/pyphetools/validation/phenopacket_validator.py
src/pyphetools/validation/validated_individual.py
src/pyphetools/validation/validation_result.py
src/pyphetools/visualization/__init__.py
src/pyphetools/visualization/detailed_suppl_table.py
src/pyphetools/visualization/focus_count_table.py
src/pyphetools/visualization/hpo_category.py
src/pyphetools/visualization/hpoa_table_creator.py
src/pyphetools/visualization/html_table_generator.py
src/pyphetools/visualization/individual_table.py
src/pyphetools/visualization/phenopacket_charts.py
src/pyphetools/visualization/phenopacket_ingestor.py
src/pyphetools/visualization/phenopacket_table.py
src/pyphetools/visualization/qc_visualizer.py
src/pyphetools/visualization/simple_age.py
src/pyphetools/visualization/simple_patient.py
src/pyphetools/visualization/simple_variant.py
src/pyphetools/visualization/term_count.py
src/pyphetools/visualization/variant_visualizer.py
test/test_age_column_mapper.py
test/test_age_isoformater.py
test/test_assume_excluded.py
test/test_case_encoder.py
test/test_cohort_validator.py
test/test_constant_column_mapper.py
test/test_hp_term.py
test/test_hpo_category.py
test/test_hpo_cr.py
test/test_hpo_parser.py
test/test_metadata.py
test/test_ontology_qc.py
test/test_option_column_mapper.py
test/test_option_column_mapper2.py
test/test_phenopacket_table.py
test/test_simple_age.py
test/test_simple_variant.py
test/test_structural_variant.py
test/test_threshold_column_mapper.py
test/test_thresholder.py
test/test_validation_result.py
test/test_variant.py
test/test_vital_status.py