LICENSE
MANIFEST.in
README.md
pyproject.toml
src/pyphetools/__init__.py
src/pyphetools.egg-info/PKG-INFO
src/pyphetools.egg-info/SOURCES.txt
src/pyphetools.egg-info/dependency_links.txt
src/pyphetools.egg-info/not-zip-safe
src/pyphetools.egg-info/requires.txt
src/pyphetools.egg-info/top_level.txt
src/pyphetools/creation/__init__.py
src/pyphetools/creation/abstract_encoder.py
src/pyphetools/creation/age_column_mapper.py
src/pyphetools/creation/age_isoformater.py
src/pyphetools/creation/age_of_death_mapper.py
src/pyphetools/creation/allelic_requirement.py
src/pyphetools/creation/case_template_encoder.py
src/pyphetools/creation/citation.py
src/pyphetools/creation/cohort_encoder.py
src/pyphetools/creation/column_mapper.py
src/pyphetools/creation/constant_column_mapper.py
src/pyphetools/creation/constants.py
src/pyphetools/creation/create_template.py
src/pyphetools/creation/discombulator.py
src/pyphetools/creation/disease.py
src/pyphetools/creation/disease_id_column_mapper.py
src/pyphetools/creation/hgvs_variant.py
src/pyphetools/creation/hp_term.py
src/pyphetools/creation/hpo_base_cr.py
src/pyphetools/creation/hpo_cr.py
src/pyphetools/creation/hpo_exact_cr.py
src/pyphetools/creation/hpo_fasthpocr_cr.py
src/pyphetools/creation/hpo_parser.py
src/pyphetools/creation/import_template.py
src/pyphetools/creation/individual.py
src/pyphetools/creation/intergenic_variant.py
src/pyphetools/creation/measurements.py
src/pyphetools/creation/metadata.py
src/pyphetools/creation/mode_of_inheritance.py
src/pyphetools/creation/ontology_terms.py
src/pyphetools/creation/option_column_mapper.py
src/pyphetools/creation/pyphetools_age.py
src/pyphetools/creation/scm_generator.py
src/pyphetools/creation/sex_column_mapper.py
src/pyphetools/creation/simple_column_mapper.py
src/pyphetools/creation/structural_variant.py
src/pyphetools/creation/thresholded_column_mapper.py
src/pyphetools/creation/thresholder.py
src/pyphetools/creation/variant.py
src/pyphetools/creation/variant_column_mapper.py
src/pyphetools/creation/variant_manager.py
src/pyphetools/creation/variant_validator.py
src/pyphetools/creation/data/thresholds.tsv
src/pyphetools/pp/__init__.py
src/pyphetools/pp/_api.py
src/pyphetools/pp/_timestamp.py
src/pyphetools/pp/parse/__init__.py
src/pyphetools/pp/parse/_io.py
src/pyphetools/pp/parse/_pb.py
src/pyphetools/pp/parse/_test_util.py
src/pyphetools/pp/parse/_util.py
src/pyphetools/pp/parse/json/__init__.py
src/pyphetools/pp/parse/json/_json.py
src/pyphetools/pp/v202/__init__.py
src/pyphetools/pp/v202/_base.py
src/pyphetools/pp/v202/_biosample.py
src/pyphetools/pp/v202/_disease.py
src/pyphetools/pp/v202/_gene_descriptor.py
src/pyphetools/pp/v202/_individual.py
src/pyphetools/pp/v202/_interpretation.py
src/pyphetools/pp/v202/_measurement.py
src/pyphetools/pp/v202/_medical_action.py
src/pyphetools/pp/v202/_meta_data.py
src/pyphetools/pp/v202/_phenopackets.py
src/pyphetools/pp/v202/_phenotypic_feature.py
src/pyphetools/pp/v202/_test_individual.py
src/pyphetools/pp/v202/_vrs.py
src/pyphetools/pp/v202/_vrsatile.py
src/pyphetools/validation/__init__.py
src/pyphetools/validation/cohort_validator.py
src/pyphetools/validation/content_validator.py
src/pyphetools/validation/ontology_qc.py
src/pyphetools/validation/phenopacket_validator.py
src/pyphetools/validation/validated_individual.py
src/pyphetools/validation/validation_result.py
src/pyphetools/visualization/__init__.py
src/pyphetools/visualization/counted_hpo_term.py
src/pyphetools/visualization/detailed_suppl_table.py
src/pyphetools/visualization/disease_specific_hpo_counter.py
src/pyphetools/visualization/focus_count_table.py
src/pyphetools/visualization/hpo_category.py
src/pyphetools/visualization/hpoa_table_creator.py
src/pyphetools/visualization/html_table_generator.py
src/pyphetools/visualization/individual_table.py
src/pyphetools/visualization/kaplan_meier_visualizer.py
src/pyphetools/visualization/onset_calculator.py
src/pyphetools/visualization/phenopacket_charts.py
src/pyphetools/visualization/phenopacket_ingestor.py
src/pyphetools/visualization/phenopacket_table.py
src/pyphetools/visualization/qc_visualizer.py
src/pyphetools/visualization/simple_age.py
src/pyphetools/visualization/simple_patient.py
src/pyphetools/visualization/simple_variant.py
src/pyphetools/visualization/term_count.py
src/pyphetools/visualization/variant_visualizer.py
test/test_age_column_mapper.py
test/test_age_isoformater.py
test/test_assume_excluded.py
test/test_citation.py
test/test_cohort_validator.py
test/test_constant_column_mapper.py
test/test_disease.py
test/test_disease_specific_hpo_counter.py
test/test_hp_term.py
test/test_hpo_category.py
test/test_hpo_cr.py
test/test_hpo_fasthpocr_cr.py
test/test_hpo_parser.py
test/test_individual.py
test/test_intergenic_variant.py
test/test_measurements.py
test/test_metadata.py
test/test_moi.py
test/test_ontology_qc.py
test/test_option_column_mapper.py
test/test_option_column_mapper2.py
test/test_phenopacket_table.py
test/test_pyphetools_age.py
test/test_simple_age.py
test/test_simple_variant.py
test/test_structural_variant.py
test/test_threshold_column_mapper.py
test/test_thresholder.py
test/test_validation_result.py
test/test_variant.py
test/test_vital_status.py