README.rst
setup.py
pypgx/__init__.py
pypgx/__main__.py
pypgx/version.py
pypgx.egg-info/PKG-INFO
pypgx.egg-info/SOURCES.txt
pypgx.egg-info/dependency_links.txt
pypgx.egg-info/entry_points.txt
pypgx.egg-info/requires.txt
pypgx.egg-info/top_level.txt
pypgx/api/__init__.py
pypgx/api/beagle.28Jun21.220.jar
pypgx/api/core.py
pypgx/api/genotype.py
pypgx/api/pipeline.py
pypgx/api/plot.py
pypgx/api/utils.py
pypgx/api/1kgp/GRCh37/CACNA1S.vcf.gz
pypgx/api/1kgp/GRCh37/CFTR.vcf.gz
pypgx/api/1kgp/GRCh37/CYP1A2.vcf.gz
pypgx/api/1kgp/GRCh37/CYP26A1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2A13.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2A6.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2B6.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2C19.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2C8.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2C9.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2D6.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2E1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2F1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2J2.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2R1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2S1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP2W1.vcf.gz
pypgx/api/1kgp/GRCh37/CYP3A4.vcf.gz
pypgx/api/1kgp/GRCh37/CYP3A43.vcf.gz
pypgx/api/1kgp/GRCh37/CYP3A5.vcf.gz
pypgx/api/1kgp/GRCh37/CYP3A7.vcf.gz
pypgx/api/1kgp/GRCh37/CYP4F2.vcf.gz
pypgx/api/1kgp/GRCh37/DPYD.vcf.gz
pypgx/api/1kgp/GRCh37/GSTM1.vcf.gz
pypgx/api/1kgp/GRCh37/GSTP1.vcf.gz
pypgx/api/1kgp/GRCh37/GSTT1.vcf.gz
pypgx/api/1kgp/GRCh37/NAT1.vcf.gz
pypgx/api/1kgp/GRCh37/NAT2.vcf.gz
pypgx/api/1kgp/GRCh37/NUDT15.vcf.gz
pypgx/api/1kgp/GRCh37/RYR1.vcf.gz
pypgx/api/1kgp/GRCh37/SLC15A2.vcf.gz
pypgx/api/1kgp/GRCh37/SLC22A2.vcf.gz
pypgx/api/1kgp/GRCh37/SLCO1B1.vcf.gz
pypgx/api/1kgp/GRCh37/SLCO2B1.vcf.gz
pypgx/api/1kgp/GRCh37/TPMT.vcf.gz
pypgx/api/1kgp/GRCh37/UGT1A1.vcf.gz
pypgx/api/1kgp/GRCh37/UGT2B15.vcf.gz
pypgx/api/1kgp/GRCh37/UGT2B17.vcf.gz
pypgx/api/1kgp/GRCh37/UGT2B7.vcf.gz
pypgx/api/1kgp/GRCh37/VKORC1.vcf.gz
pypgx/api/cnv/CYP2A6.zip
pypgx/api/cnv/CYP2B6.zip
pypgx/api/cnv/CYP2D6.zip
pypgx/api/cnv/CYP2E1.zip
pypgx/api/cnv/GSTM1.zip
pypgx/api/cnv/GSTT1.zip
pypgx/api/cnv/SLC22A2.zip
pypgx/api/cnv/UGT2B15.zip
pypgx/api/cnv/UGT2B17.zip
pypgx/api/data/__init__.py
pypgx/api/data/allele-table.csv
pypgx/api/data/cnv-table.csv
pypgx/api/data/diplotype-table.csv
pypgx/api/data/equation-table.csv
pypgx/api/data/gene-table.csv
pypgx/api/data/phenotype-table.csv
pypgx/api/data/variant-table.csv
pypgx/cli/__init__.py
pypgx/cli/call_genotypes.py
pypgx/cli/call_phenotypes.py
pypgx/cli/combine_results.py
pypgx/cli/compute_control_statistics.py
pypgx/cli/compute_copy_number.py
pypgx/cli/compute_target_depth.py
pypgx/cli/create_consolidated_vcf.py
pypgx/cli/create_regions_bed.py
pypgx/cli/estimate_phase_beagle.py
pypgx/cli/filter_samples.py
pypgx/cli/import_read_depth.py
pypgx/cli/import_variants.py
pypgx/cli/plot_bam_copy_number.py
pypgx/cli/plot_bam_read_depth.py
pypgx/cli/plot_vcf_allele_fraction.py
pypgx/cli/plot_vcf_read_depth.py
pypgx/cli/predict_alleles.py
pypgx/cli/predict_cnv.py
pypgx/cli/prepare_depth_of_coverage.py
pypgx/cli/print_metadata.py
pypgx/cli/run_ngs_pipeline.py
pypgx/cli/test_cnv_caller.py
pypgx/cli/train_cnv_caller.py
pypgx/sdk/__init__.py
pypgx/sdk/utils.py