README.md
setup.py
pypgatk/__init__.py
pypgatk/pypgatk_cli.py
pypgatk.egg-info/PKG-INFO
pypgatk.egg-info/SOURCES.txt
pypgatk.egg-info/dependency_links.txt
pypgatk.egg-info/not-zip-safe
pypgatk.egg-info/requires.txt
pypgatk.egg-info/top_level.txt
pypgatk/cgenomes/__init__.py
pypgatk/cgenomes/cbioportal_downloader.py
pypgatk/cgenomes/cgenomes_proteindb.py
pypgatk/cgenomes/cosmic_downloader.py
pypgatk/cgenomes/models.py
pypgatk/commands/__init__.py
pypgatk/commands/cbioportal_downloader.py
pypgatk/commands/cbioportal_to_proteindb.py
pypgatk/commands/cosmic_downloader.py
pypgatk/commands/cosmic_to_proteindb.py
pypgatk/commands/dnaseq_to_proteindb.py
pypgatk/commands/ensembl_downloader.py
pypgatk/commands/proteindb_decoy.py
pypgatk/commands/threeframe_translation.py
pypgatk/commands/utils.py
pypgatk/commands/vcf_to_proteindb.py
pypgatk/db/__init__.py
pypgatk/db/digest_mutant_protein.py
pypgatk/db/map_peptide2genome.py
pypgatk/ensembl/__init__.py
pypgatk/ensembl/data_downloader.py
pypgatk/ensembl/ensembl.py
pypgatk/ensembl/exceptions.py
pypgatk/ensembl/models.py
pypgatk/proteomics/__init__.py
pypgatk/proteomics/db/__init__.py
pypgatk/proteomics/db/decoy_pyrat.py
pypgatk/tests/__init__.py
pypgatk/tests/pypgatk_tests.py
pypgatk/toolbox/__init__.py
pypgatk/toolbox/exceptions.py
pypgatk/toolbox/general.py
pypgatk/toolbox/rest.py