LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
pypesto/__init__.py
pypesto/logging.py
pypesto/problem.py
pypesto/result.py
pypesto/version.py
pypesto.egg-info/PKG-INFO
pypesto.egg-info/SOURCES.txt
pypesto.egg-info/dependency_links.txt
pypesto.egg-info/requires.txt
pypesto.egg-info/top_level.txt
pypesto/engine/__init__.py
pypesto/engine/base.py
pypesto/engine/mpi_pool.py
pypesto/engine/multi_process.py
pypesto/engine/multi_thread.py
pypesto/engine/single_core.py
pypesto/engine/task.py
pypesto/ensemble/__init__.py
pypesto/ensemble/constants.py
pypesto/ensemble/covariance_analysis.py
pypesto/ensemble/dimension_reduction.py
pypesto/ensemble/ensemble.py
pypesto/ensemble/task.py
pypesto/ensemble/utils.py
pypesto/objective/__init__.py
pypesto/objective/aesara.py
pypesto/objective/aggregated.py
pypesto/objective/amici.py
pypesto/objective/amici_calculator.py
pypesto/objective/amici_util.py
pypesto/objective/base.py
pypesto/objective/constants.py
pypesto/objective/finite_difference.py
pypesto/objective/function.py
pypesto/objective/history.py
pypesto/objective/pre_post_process.py
pypesto/objective/priors.py
pypesto/objective/util.py
pypesto/optimize/__init__.py
pypesto/optimize/optimize.py
pypesto/optimize/optimizer.py
pypesto/optimize/options.py
pypesto/optimize/result.py
pypesto/optimize/task.py
pypesto/optimize/util.py
pypesto/petab/__init__.py
pypesto/petab/importer.py
pypesto/petab/pysb_importer.py
pypesto/predict/__init__.py
pypesto/predict/amici_predictor.py
pypesto/predict/constants.py
pypesto/predict/result.py
pypesto/predict/task.py
pypesto/profile/__init__.py
pypesto/profile/approximate.py
pypesto/profile/options.py
pypesto/profile/profile.py
pypesto/profile/profile_next_guess.py
pypesto/profile/result.py
pypesto/profile/task.py
pypesto/profile/util.py
pypesto/profile/validation_intervals.py
pypesto/profile/walk_along_profile.py
pypesto/sample/__init__.py
pypesto/sample/adaptive_metropolis.py
pypesto/sample/adaptive_parallel_tempering.py
pypesto/sample/auto_correlation.py
pypesto/sample/diagnostics.py
pypesto/sample/emcee.py
pypesto/sample/geweke_test.py
pypesto/sample/metropolis.py
pypesto/sample/parallel_tempering.py
pypesto/sample/pymc3.py
pypesto/sample/result.py
pypesto/sample/sample.py
pypesto/sample/sampler.py
pypesto/sample/theano.py
pypesto/sample/util.py
pypesto/startpoint/__init__.py
pypesto/startpoint/assign.py
pypesto/startpoint/base.py
pypesto/startpoint/latin_hypercube.py
pypesto/startpoint/uniform.py
pypesto/startpoint/util.py
pypesto/store/__init__.py
pypesto/store/hdf5.py
pypesto/store/read_from_hdf5.py
pypesto/store/save_to_hdf5.py
pypesto/visualize/__init__.py
pypesto/visualize/clust_color.py
pypesto/visualize/constants.py
pypesto/visualize/dimension_reduction.py
pypesto/visualize/ensemble.py
pypesto/visualize/misc.py
pypesto/visualize/model_fit.py
pypesto/visualize/optimization_stats.py
pypesto/visualize/optimizer_convergence.py
pypesto/visualize/optimizer_history.py
pypesto/visualize/parameters.py
pypesto/visualize/profile_cis.py
pypesto/visualize/profiles.py
pypesto/visualize/reference_points.py
pypesto/visualize/sampling.py
pypesto/visualize/waterfall.py