LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
pypesto/C.py
pypesto/__init__.py
pypesto/logging.py
pypesto/util.py
pypesto/version.py
pypesto.egg-info/PKG-INFO
pypesto.egg-info/SOURCES.txt
pypesto.egg-info/dependency_links.txt
pypesto.egg-info/requires.txt
pypesto.egg-info/top_level.txt
pypesto/engine/__init__.py
pypesto/engine/base.py
pypesto/engine/mpi_pool.py
pypesto/engine/multi_process.py
pypesto/engine/multi_thread.py
pypesto/engine/single_core.py
pypesto/engine/task.py
pypesto/ensemble/__init__.py
pypesto/ensemble/covariance_analysis.py
pypesto/ensemble/dimension_reduction.py
pypesto/ensemble/ensemble.py
pypesto/ensemble/task.py
pypesto/ensemble/util.py
pypesto/hierarchical/__init__.py
pypesto/hierarchical/calculator.py
pypesto/hierarchical/parameter.py
pypesto/hierarchical/petab.py
pypesto/hierarchical/problem.py
pypesto/hierarchical/solver.py
pypesto/hierarchical/util.py
pypesto/history/__init__.py
pypesto/history/base.py
pypesto/history/csv.py
pypesto/history/generate.py
pypesto/history/hdf5.py
pypesto/history/memory.py
pypesto/history/optimizer.py
pypesto/history/options.py
pypesto/history/util.py
pypesto/objective/__init__.py
pypesto/objective/aggregated.py
pypesto/objective/base.py
pypesto/objective/finite_difference.py
pypesto/objective/function.py
pypesto/objective/pre_post_process.py
pypesto/objective/priors.py
pypesto/objective/aesara/__init__.py
pypesto/objective/aesara/base.py
pypesto/objective/amici/__init__.py
pypesto/objective/amici/amici.py
pypesto/objective/amici/amici_calculator.py
pypesto/objective/amici/amici_util.py
pypesto/objective/jax/__init__.py
pypesto/objective/jax/base.py
pypesto/objective/julia/__init__.py
pypesto/objective/julia/base.py
pypesto/optimize/__init__.py
pypesto/optimize/load.py
pypesto/optimize/optimize.py
pypesto/optimize/optimizer.py
pypesto/optimize/options.py
pypesto/optimize/task.py
pypesto/optimize/util.py
pypesto/optimize/ess/__init__.py
pypesto/optimize/ess/cess.py
pypesto/optimize/ess/ess.py
pypesto/optimize/ess/function_evaluator.py
pypesto/optimize/ess/refset.py
pypesto/petab/__init__.py
pypesto/petab/importer.py
pypesto/petab/pysb_importer.py
pypesto/predict/__init__.py
pypesto/predict/amici_predictor.py
pypesto/predict/task.py
pypesto/problem/__init__.py
pypesto/problem/base.py
pypesto/profile/__init__.py
pypesto/profile/approximate.py
pypesto/profile/options.py
pypesto/profile/profile.py
pypesto/profile/profile_next_guess.py
pypesto/profile/task.py
pypesto/profile/util.py
pypesto/profile/validation_intervals.py
pypesto/profile/walk_along_profile.py
pypesto/result/__init__.py
pypesto/result/optimize.py
pypesto/result/predict.py
pypesto/result/profile.py
pypesto/result/result.py
pypesto/result/sample.py
pypesto/sample/__init__.py
pypesto/sample/adaptive_metropolis.py
pypesto/sample/adaptive_parallel_tempering.py
pypesto/sample/auto_correlation.py
pypesto/sample/diagnostics.py
pypesto/sample/dynesty.py
pypesto/sample/emcee.py
pypesto/sample/geweke_test.py
pypesto/sample/metropolis.py
pypesto/sample/parallel_tempering.py
pypesto/sample/pymc.py
pypesto/sample/sample.py
pypesto/sample/sampler.py
pypesto/sample/util.py
pypesto/select/__init__.py
pypesto/select/method.py
pypesto/select/misc.py
pypesto/select/model_problem.py
pypesto/select/postprocessors.py
pypesto/select/problem.py
pypesto/startpoint/__init__.py
pypesto/startpoint/base.py
pypesto/startpoint/latin_hypercube.py
pypesto/startpoint/uniform.py
pypesto/startpoint/util.py
pypesto/store/__init__.py
pypesto/store/auto.py
pypesto/store/hdf5.py
pypesto/store/read_from_hdf5.py
pypesto/store/save_to_hdf5.py
pypesto/testing/__init__.py
pypesto/testing/examples.py
pypesto/visualize/__init__.py
pypesto/visualize/clust_color.py
pypesto/visualize/dimension_reduction.py
pypesto/visualize/ensemble.py
pypesto/visualize/misc.py
pypesto/visualize/model_fit.py
pypesto/visualize/optimization_stats.py
pypesto/visualize/optimizer_convergence.py
pypesto/visualize/optimizer_history.py
pypesto/visualize/parameters.py
pypesto/visualize/profile_cis.py
pypesto/visualize/profiles.py
pypesto/visualize/reference_points.py
pypesto/visualize/sampling.py
pypesto/visualize/select.py
pypesto/visualize/waterfall.py