README.md
setup.py
pypesto/__init__.py
pypesto/logging.py
pypesto/problem.py
pypesto/result.py
pypesto/version.py
pypesto.egg-info/PKG-INFO
pypesto.egg-info/SOURCES.txt
pypesto.egg-info/dependency_links.txt
pypesto.egg-info/requires.txt
pypesto.egg-info/top_level.txt
pypesto/engine/__init__.py
pypesto/engine/base.py
pypesto/engine/multi_process.py
pypesto/engine/multi_thread.py
pypesto/engine/single_core.py
pypesto/engine/task.py
pypesto/objective/__init__.py
pypesto/objective/aggregated.py
pypesto/objective/amici.py
pypesto/objective/amici_calculator.py
pypesto/objective/amici_util.py
pypesto/objective/base.py
pypesto/objective/constants.py
pypesto/objective/function.py
pypesto/objective/history.py
pypesto/objective/pre_post_process.py
pypesto/objective/priors.py
pypesto/objective/util.py
pypesto/optimize/__init__.py
pypesto/optimize/optimize.py
pypesto/optimize/optimizer.py
pypesto/optimize/options.py
pypesto/optimize/result.py
pypesto/petab/__init__.py
pypesto/petab/importer.py
pypesto/profile/__init__.py
pypesto/profile/approximate.py
pypesto/profile/options.py
pypesto/profile/profile.py
pypesto/profile/profile_next_guess.py
pypesto/profile/result.py
pypesto/profile/util.py
pypesto/sampling/__init__.py
pypesto/sampling/adaptive_metropolis.py
pypesto/sampling/adaptive_parallel_tempering.py
pypesto/sampling/diagnostics.py
pypesto/sampling/geweke_test.py
pypesto/sampling/metropolis.py
pypesto/sampling/parallel_tempering.py
pypesto/sampling/pymc3.py
pypesto/sampling/result.py
pypesto/sampling/sample.py
pypesto/sampling/sampler.py
pypesto/sampling/theano.py
pypesto/startpoint/__init__.py
pypesto/startpoint/latin_hypercube.py
pypesto/startpoint/uniform.py
pypesto/startpoint/util.py
pypesto/storage/__init__.py
pypesto/storage/hdf5.py
pypesto/storage/read_from_hdf5.py
pypesto/storage/save_to_hdf5.py
pypesto/visualize/__init__.py
pypesto/visualize/clust_color.py
pypesto/visualize/misc.py
pypesto/visualize/optimizer_history.py
pypesto/visualize/parameters.py
pypesto/visualize/profile_cis.py
pypesto/visualize/profiles.py
pypesto/visualize/reference_points.py
pypesto/visualize/sampling.py
pypesto/visualize/waterfall.py
test/test_aggregated.py
test/test_amici_objective.py
test/test_engine.py
test/test_history.py
test/test_logging.py
test/test_objective.py
test/test_optimize.py
test/test_petab_import.py
test/test_petab_suite.py
test/test_prior.py
test/test_problem.py
test/test_profile.py
test/test_sampling.py
test/test_sbml_conversion.py
test/test_startpoint.py
test/test_storage.py
test/test_x_fixed.py