LICENSE.md
MANIFEST.in
README.md
requirements.txt
setup.py
pypef/__init__.py
pypef/main.py
pypef.egg-info/PKG-INFO
pypef.egg-info/SOURCES.txt
pypef.egg-info/dependency_links.txt
pypef.egg-info/entry_points.txt
pypef.egg-info/requires.txt
pypef.egg-info/top_level.txt
pypef/dca/__init__.py
pypef/dca/dca_run.py
pypef/dca/gremlin_inference.py
pypef/dca/hybrid_model.py
pypef/dca/plmc_encoding.py
pypef/ml/__init__.py
pypef/ml/ml_run.py
pypef/ml/parallelization.py
pypef/ml/regression.py
pypef/ml/AAindex/ANDN920101.txt
pypef/ml/AAindex/ARGP820101.txt
pypef/ml/AAindex/ARGP820102.txt
pypef/ml/AAindex/ARGP820103.txt
pypef/ml/AAindex/AURR980101.txt
pypef/ml/AAindex/AURR980102.txt
pypef/ml/AAindex/AURR980103.txt
pypef/ml/AAindex/AURR980104.txt
pypef/ml/AAindex/AURR980105.txt
pypef/ml/AAindex/AURR980106.txt
pypef/ml/AAindex/AURR980107.txt
pypef/ml/AAindex/AURR980108.txt
pypef/ml/AAindex/AURR980109.txt
pypef/ml/AAindex/AURR980110.txt
pypef/ml/AAindex/AURR980111.txt
pypef/ml/AAindex/AURR980112.txt
pypef/ml/AAindex/AURR980113.txt
pypef/ml/AAindex/AURR980114.txt
pypef/ml/AAindex/AURR980115.txt
pypef/ml/AAindex/AURR980116.txt
pypef/ml/AAindex/AURR980117.txt
pypef/ml/AAindex/AURR980118.txt
pypef/ml/AAindex/AURR980119.txt
pypef/ml/AAindex/AURR980120.txt
pypef/ml/AAindex/AVBF000101.txt
pypef/ml/AAindex/AVBF000102.txt
pypef/ml/AAindex/AVBF000103.txt
pypef/ml/AAindex/AVBF000104.txt
pypef/ml/AAindex/AVBF000105.txt
pypef/ml/AAindex/AVBF000106.txt
pypef/ml/AAindex/AVBF000107.txt
pypef/ml/AAindex/AVBF000108.txt
pypef/ml/AAindex/AVBF000109.txt
pypef/ml/AAindex/BAEK050101.txt
pypef/ml/AAindex/BASU050101.txt
pypef/ml/AAindex/BASU050102.txt
pypef/ml/AAindex/BASU050103.txt
pypef/ml/AAindex/BEGF750101.txt
pypef/ml/AAindex/BEGF750102.txt
pypef/ml/AAindex/BEGF750103.txt
pypef/ml/AAindex/BHAR880101.txt
pypef/ml/AAindex/BIGC670101.txt
pypef/ml/AAindex/BIOV880101.txt
pypef/ml/AAindex/BIOV880102.txt
pypef/ml/AAindex/BLAM930101.txt
pypef/ml/AAindex/BLAS910101.txt
pypef/ml/AAindex/BROC820101.txt
pypef/ml/AAindex/BROC820102.txt
pypef/ml/AAindex/BULH740101.txt
pypef/ml/AAindex/BULH740102.txt
pypef/ml/AAindex/BUNA790101.txt
pypef/ml/AAindex/BUNA790102.txt
pypef/ml/AAindex/BUNA790103.txt
pypef/ml/AAindex/BURA740101.txt
pypef/ml/AAindex/BURA740102.txt
pypef/ml/AAindex/CASG920101.txt
pypef/ml/AAindex/CEDJ970101.txt
pypef/ml/AAindex/CEDJ970102.txt
pypef/ml/AAindex/CEDJ970103.txt
pypef/ml/AAindex/CEDJ970104.txt
pypef/ml/AAindex/CEDJ970105.txt
pypef/ml/AAindex/CHAM810101.txt
pypef/ml/AAindex/CHAM820101.txt
pypef/ml/AAindex/CHAM820102.txt
pypef/ml/AAindex/CHAM830101.txt
pypef/ml/AAindex/CHAM830102.txt
pypef/ml/AAindex/CHAM830103.txt
pypef/ml/AAindex/CHAM830104.txt
pypef/ml/AAindex/CHAM830105.txt
pypef/ml/AAindex/CHAM830106.txt
pypef/ml/AAindex/CHAM830107.txt
pypef/ml/AAindex/CHAM830108.txt
pypef/ml/AAindex/CHOC750101.txt
pypef/ml/AAindex/CHOC760101.txt
pypef/ml/AAindex/CHOC760102.txt
pypef/ml/AAindex/CHOC760103.txt
pypef/ml/AAindex/CHOC760104.txt
pypef/ml/AAindex/CHOP780101.txt
pypef/ml/AAindex/CHOP780201.txt
pypef/ml/AAindex/CHOP780202.txt
pypef/ml/AAindex/CHOP780203.txt
pypef/ml/AAindex/CHOP780204.txt
pypef/ml/AAindex/CHOP780205.txt
pypef/ml/AAindex/CHOP780206.txt
pypef/ml/AAindex/CHOP780207.txt
pypef/ml/AAindex/CHOP780208.txt
pypef/ml/AAindex/CHOP780209.txt
pypef/ml/AAindex/CHOP780210.txt
pypef/ml/AAindex/CHOP780211.txt
pypef/ml/AAindex/CHOP780212.txt
pypef/ml/AAindex/CHOP780213.txt
pypef/ml/AAindex/CHOP780214.txt
pypef/ml/AAindex/CHOP780215.txt
pypef/ml/AAindex/CHOP780216.txt
pypef/ml/AAindex/CIDH920101.txt
pypef/ml/AAindex/CIDH920102.txt
pypef/ml/AAindex/CIDH920103.txt
pypef/ml/AAindex/CIDH920104.txt
pypef/ml/AAindex/CIDH920105.txt
pypef/ml/AAindex/COHE430101.txt
pypef/ml/AAindex/CORJ870101.txt
pypef/ml/AAindex/CORJ870102.txt
pypef/ml/AAindex/CORJ870103.txt
pypef/ml/AAindex/CORJ870104.txt
pypef/ml/AAindex/CORJ870105.txt
pypef/ml/AAindex/CORJ870106.txt
pypef/ml/AAindex/CORJ870107.txt
pypef/ml/AAindex/CORJ870108.txt
pypef/ml/AAindex/COSI940101.txt
pypef/ml/AAindex/COWR900101.txt
pypef/ml/AAindex/CRAJ730101.txt
pypef/ml/AAindex/CRAJ730102.txt
pypef/ml/AAindex/CRAJ730103.txt
pypef/ml/AAindex/DAWD720101.txt
pypef/ml/AAindex/DAYM780101.txt
pypef/ml/AAindex/DAYM780201.txt
pypef/ml/AAindex/DESM900101.txt
pypef/ml/AAindex/DESM900102.txt
pypef/ml/AAindex/DIGM050101.txt
pypef/ml/AAindex/EISD840101.txt
pypef/ml/AAindex/EISD860101.txt
pypef/ml/AAindex/EISD860102.txt
pypef/ml/AAindex/EISD860103.txt
pypef/ml/AAindex/ENGD860101.txt
pypef/ml/AAindex/FASG760101.txt
pypef/ml/AAindex/FASG760102.txt
pypef/ml/AAindex/FASG760103.txt
pypef/ml/AAindex/FASG760104.txt
pypef/ml/AAindex/FASG760105.txt
pypef/ml/AAindex/FASG890101.txt
pypef/ml/AAindex/FAUJ830101.txt
pypef/ml/AAindex/FAUJ880101.txt
pypef/ml/AAindex/FAUJ880102.txt
pypef/ml/AAindex/FAUJ880103.txt
pypef/ml/AAindex/FAUJ880104.txt
pypef/ml/AAindex/FAUJ880105.txt
pypef/ml/AAindex/FAUJ880106.txt
pypef/ml/AAindex/FAUJ880107.txt
pypef/ml/AAindex/FAUJ880108.txt
pypef/ml/AAindex/FAUJ880109.txt
pypef/ml/AAindex/FAUJ880110.txt
pypef/ml/AAindex/FAUJ880111.txt
pypef/ml/AAindex/FAUJ880112.txt
pypef/ml/AAindex/FAUJ880113.txt
pypef/ml/AAindex/FINA770101.txt
pypef/ml/AAindex/FINA910101.txt
pypef/ml/AAindex/FINA910102.txt
pypef/ml/AAindex/FINA910103.txt
pypef/ml/AAindex/FINA910104.txt
pypef/ml/AAindex/FODM020101.txt
pypef/ml/AAindex/FUKS010101.txt
pypef/ml/AAindex/FUKS010102.txt
pypef/ml/AAindex/FUKS010103.txt
pypef/ml/AAindex/FUKS010104.txt
pypef/ml/AAindex/FUKS010105.txt
pypef/ml/AAindex/FUKS010106.txt
pypef/ml/AAindex/FUKS010107.txt
pypef/ml/AAindex/FUKS010108.txt
pypef/ml/AAindex/FUKS010109.txt
pypef/ml/AAindex/FUKS010110.txt
pypef/ml/AAindex/FUKS010111.txt
pypef/ml/AAindex/FUKS010112.txt
pypef/ml/AAindex/GARJ730101.txt
pypef/ml/AAindex/GEIM800101.txt
pypef/ml/AAindex/GEIM800102.txt
pypef/ml/AAindex/GEIM800103.txt
pypef/ml/AAindex/GEIM800104.txt
pypef/ml/AAindex/GEIM800105.txt
pypef/ml/AAindex/GEIM800106.txt
pypef/ml/AAindex/GEIM800107.txt
pypef/ml/AAindex/GEIM800108.txt
pypef/ml/AAindex/GEIM800109.txt
pypef/ml/AAindex/GEIM800110.txt
pypef/ml/AAindex/GEIM800111.txt
pypef/ml/AAindex/GEOR030101.txt
pypef/ml/AAindex/GEOR030102.txt
pypef/ml/AAindex/GEOR030103.txt
pypef/ml/AAindex/GEOR030104.txt
pypef/ml/AAindex/GEOR030105.txt
pypef/ml/AAindex/GEOR030106.txt
pypef/ml/AAindex/GEOR030107.txt
pypef/ml/AAindex/GEOR030108.txt
pypef/ml/AAindex/GEOR030109.txt
pypef/ml/AAindex/GOLD730101.txt
pypef/ml/AAindex/GOLD730102.txt
pypef/ml/AAindex/GRAR740101.txt
pypef/ml/AAindex/GRAR740102.txt
pypef/ml/AAindex/GRAR740103.txt
pypef/ml/AAindex/GUOD860101.txt
pypef/ml/AAindex/GUYH850101.txt
pypef/ml/AAindex/GUYH850102.txt
pypef/ml/AAindex/GUYH850103.txt
pypef/ml/AAindex/GUYH850104.txt
pypef/ml/AAindex/GUYH850105.txt
pypef/ml/AAindex/HARY940101.txt
pypef/ml/AAindex/HOPA770101.txt
pypef/ml/AAindex/HOPT810101.txt
pypef/ml/AAindex/HUTJ700101.txt
pypef/ml/AAindex/HUTJ700102.txt
pypef/ml/AAindex/HUTJ700103.txt
pypef/ml/AAindex/ISOY800101.txt
pypef/ml/AAindex/ISOY800102.txt
pypef/ml/AAindex/ISOY800103.txt
pypef/ml/AAindex/ISOY800104.txt
pypef/ml/AAindex/ISOY800105.txt
pypef/ml/AAindex/ISOY800106.txt
pypef/ml/AAindex/ISOY800107.txt
pypef/ml/AAindex/ISOY800108.txt
pypef/ml/AAindex/JACR890101.txt
pypef/ml/AAindex/JANJ780101.txt
pypef/ml/AAindex/JANJ780102.txt
pypef/ml/AAindex/JANJ780103.txt
pypef/ml/AAindex/JANJ790101.txt
pypef/ml/AAindex/JANJ790102.txt
pypef/ml/AAindex/JOND750101.txt
pypef/ml/AAindex/JOND750102.txt
pypef/ml/AAindex/JOND920101.txt
pypef/ml/AAindex/JOND920102.txt
pypef/ml/AAindex/JUKT750101.txt
pypef/ml/AAindex/JUNJ780101.txt
pypef/ml/AAindex/JURD980101.txt
pypef/ml/AAindex/KANM800101.txt
pypef/ml/AAindex/KANM800102.txt
pypef/ml/AAindex/KANM800103.txt
pypef/ml/AAindex/KANM800104.txt
pypef/ml/AAindex/KARP850101.txt
pypef/ml/AAindex/KARP850102.txt
pypef/ml/AAindex/KARP850103.txt
pypef/ml/AAindex/KARS160101.txt
pypef/ml/AAindex/KARS160102.txt
pypef/ml/AAindex/KARS160103.txt
pypef/ml/AAindex/KARS160104.txt
pypef/ml/AAindex/KARS160105.txt
pypef/ml/AAindex/KARS160106.txt
pypef/ml/AAindex/KARS160107.txt
pypef/ml/AAindex/KARS160108.txt
pypef/ml/AAindex/KARS160109.txt
pypef/ml/AAindex/KARS160110.txt
pypef/ml/AAindex/KARS160111.txt
pypef/ml/AAindex/KARS160112.txt
pypef/ml/AAindex/KARS160113.txt
pypef/ml/AAindex/KARS160114.txt
pypef/ml/AAindex/KARS160115.txt
pypef/ml/AAindex/KARS160116.txt
pypef/ml/AAindex/KARS160117.txt
pypef/ml/AAindex/KARS160118.txt
pypef/ml/AAindex/KARS160119.txt
pypef/ml/AAindex/KARS160120.txt
pypef/ml/AAindex/KARS160121.txt
pypef/ml/AAindex/KARS160122.txt
pypef/ml/AAindex/KHAG800101.txt
pypef/ml/AAindex/KIDA850101.txt
pypef/ml/AAindex/KIMC930101.txt
pypef/ml/AAindex/KLEP840101.txt
pypef/ml/AAindex/KOEP990101.txt
pypef/ml/AAindex/KOEP990102.txt
pypef/ml/AAindex/KRIW710101.txt
pypef/ml/AAindex/KRIW790101.txt
pypef/ml/AAindex/KRIW790102.txt
pypef/ml/AAindex/KRIW790103.txt
pypef/ml/AAindex/KUHL950101.txt
pypef/ml/AAindex/KUMS000101.txt
pypef/ml/AAindex/KUMS000102.txt
pypef/ml/AAindex/KUMS000103.txt
pypef/ml/AAindex/KUMS000104.txt
pypef/ml/AAindex/KYTJ820101.txt
pypef/ml/AAindex/LAWE840101.txt
pypef/ml/AAindex/LEVM760101.txt
pypef/ml/AAindex/LEVM760102.txt
pypef/ml/AAindex/LEVM760103.txt
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pypef/ml/AAindex/LEVM760105.txt
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pypef/ml/AAindex/LEVM780101.txt
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pypef/ml/AAindex/LEVM780103.txt
pypef/ml/AAindex/LEVM780104.txt
pypef/ml/AAindex/LEVM780105.txt
pypef/ml/AAindex/LEVM780106.txt
pypef/ml/AAindex/LEWP710101.txt
pypef/ml/AAindex/LIFS790101.txt
pypef/ml/AAindex/LIFS790102.txt
pypef/ml/AAindex/LIFS790103.txt
pypef/ml/AAindex/MANP780101.txt
pypef/ml/AAindex/MAXF760101.txt
pypef/ml/AAindex/MAXF760102.txt
pypef/ml/AAindex/MAXF760103.txt
pypef/ml/AAindex/MAXF760104.txt
pypef/ml/AAindex/MAXF760105.txt
pypef/ml/AAindex/MAXF760106.txt
pypef/ml/AAindex/MCMT640101.txt
pypef/ml/AAindex/MEEJ800101.txt
pypef/ml/AAindex/MEEJ800102.txt
pypef/ml/AAindex/MEEJ810101.txt
pypef/ml/AAindex/MEEJ810102.txt
pypef/ml/AAindex/MEIH800101.txt
pypef/ml/AAindex/MEIH800102.txt
pypef/ml/AAindex/MEIH800103.txt
pypef/ml/AAindex/MITS020101.txt
pypef/ml/AAindex/MIYS850101.txt
pypef/ml/AAindex/MIYS990101.txt
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pypef/ml/AAindex/MIYS990103.txt
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pypef/ml/AAindex/MONM990101.txt
pypef/ml/AAindex/MONM990201.txt
pypef/ml/AAindex/MUNV940101.txt
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pypef/ml/AAindex/MUNV940103.txt
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pypef/ml/AAindex/NADH010101.txt
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pypef/ml/AAindex/NAGK730101.txt
pypef/ml/AAindex/NAGK730102.txt
pypef/ml/AAindex/NAGK730103.txt
pypef/ml/AAindex/NAKH900101.txt
pypef/ml/AAindex/NAKH900102.txt
pypef/ml/AAindex/NAKH900103.txt
pypef/ml/AAindex/NAKH900104.txt
pypef/ml/AAindex/NAKH900105.txt
pypef/ml/AAindex/NAKH900106.txt
pypef/ml/AAindex/NAKH900107.txt
pypef/ml/AAindex/NAKH900108.txt
pypef/ml/AAindex/NAKH900109.txt
pypef/ml/AAindex/NAKH900110.txt
pypef/ml/AAindex/NAKH900111.txt
pypef/ml/AAindex/NAKH900112.txt
pypef/ml/AAindex/NAKH900113.txt
pypef/ml/AAindex/NAKH920101.txt
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pypef/ml/AAindex/NISK800101.txt
pypef/ml/AAindex/NISK860101.txt
pypef/ml/AAindex/NOZY710101.txt
pypef/ml/AAindex/OLSK800101.txt
pypef/ml/AAindex/ONEK900101.txt
pypef/ml/AAindex/ONEK900102.txt
pypef/ml/AAindex/OOBM770101.txt
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pypef/ml/AAindex/PALJ810101.txt
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pypef/ml/AAindex/PARJ860101.txt
pypef/ml/AAindex/PARS000101.txt
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pypef/ml/AAindex/PLIV810101.txt
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pypef/ml/AAindex/PONP800102.txt
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pypef/ml/AAindex/PONP930101.txt
pypef/ml/AAindex/PRAM820101.txt
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pypef/ml/AAindex/PRAM900101.txt
pypef/ml/AAindex/PRAM900102.txt
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pypef/ml/AAindex/PTIO830101.txt
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pypef/ml/AAindex/PUNT030101.txt
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pypef/ml/AAindex/QIAN880101.txt
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pypef/ml/AAindex/RACS770101.txt
pypef/ml/AAindex/RACS770102.txt
pypef/ml/AAindex/RACS770103.txt
pypef/ml/AAindex/RACS820101.txt
pypef/ml/AAindex/RACS820102.txt
pypef/ml/AAindex/RACS820103.txt
pypef/ml/AAindex/RACS820104.txt
pypef/ml/AAindex/RACS820105.txt
pypef/ml/AAindex/RACS820106.txt
pypef/ml/AAindex/RACS820107.txt
pypef/ml/AAindex/RACS820108.txt
pypef/ml/AAindex/RACS820109.txt
pypef/ml/AAindex/RACS820110.txt
pypef/ml/AAindex/RACS820111.txt
pypef/ml/AAindex/RACS820112.txt
pypef/ml/AAindex/RACS820113.txt
pypef/ml/AAindex/RACS820114.txt
pypef/ml/AAindex/RADA880101.txt
pypef/ml/AAindex/RADA880102.txt
pypef/ml/AAindex/RADA880103.txt
pypef/ml/AAindex/RADA880104.txt
pypef/ml/AAindex/RADA880105.txt
pypef/ml/AAindex/RADA880106.txt
pypef/ml/AAindex/RADA880107.txt
pypef/ml/AAindex/RADA880108.txt
pypef/ml/AAindex/RICJ880101.txt
pypef/ml/AAindex/RICJ880102.txt
pypef/ml/AAindex/RICJ880103.txt
pypef/ml/AAindex/RICJ880104.txt
pypef/ml/AAindex/RICJ880105.txt
pypef/ml/AAindex/RICJ880106.txt
pypef/ml/AAindex/RICJ880107.txt
pypef/ml/AAindex/RICJ880108.txt
pypef/ml/AAindex/RICJ880109.txt
pypef/ml/AAindex/RICJ880110.txt
pypef/ml/AAindex/RICJ880111.txt
pypef/ml/AAindex/RICJ880112.txt
pypef/ml/AAindex/RICJ880113.txt
pypef/ml/AAindex/RICJ880114.txt
pypef/ml/AAindex/RICJ880115.txt
pypef/ml/AAindex/RICJ880116.txt
pypef/ml/AAindex/RICJ880117.txt
pypef/ml/AAindex/ROBB760101.txt
pypef/ml/AAindex/ROBB760102.txt
pypef/ml/AAindex/ROBB760103.txt
pypef/ml/AAindex/ROBB760104.txt
pypef/ml/AAindex/ROBB760105.txt
pypef/ml/AAindex/ROBB760106.txt
pypef/ml/AAindex/ROBB760107.txt
pypef/ml/AAindex/ROBB760108.txt
pypef/ml/AAindex/ROBB760109.txt
pypef/ml/AAindex/ROBB760110.txt
pypef/ml/AAindex/ROBB760111.txt
pypef/ml/AAindex/ROBB760112.txt
pypef/ml/AAindex/ROBB760113.txt
pypef/ml/AAindex/ROBB790101.txt
pypef/ml/AAindex/ROSG850101.txt
pypef/ml/AAindex/ROSG850102.txt
pypef/ml/AAindex/ROSM880101.txt
pypef/ml/AAindex/ROSM880102.txt
pypef/ml/AAindex/ROSM880103.txt
pypef/ml/AAindex/ROSM880104.txt
pypef/ml/AAindex/ROSM880105.txt
pypef/ml/AAindex/SIMZ760101.txt
pypef/ml/AAindex/SNEP660101.txt
pypef/ml/AAindex/SNEP660102.txt
pypef/ml/AAindex/SNEP660103.txt
pypef/ml/AAindex/SNEP660104.txt
pypef/ml/AAindex/SUEM840101.txt
pypef/ml/AAindex/SUEM840102.txt
pypef/ml/AAindex/SUYM030101.txt
pypef/ml/AAindex/SWER830101.txt
pypef/ml/AAindex/TAKK010101.txt
pypef/ml/AAindex/TANS770101.txt
pypef/ml/AAindex/TANS770102.txt
pypef/ml/AAindex/TANS770103.txt
pypef/ml/AAindex/TANS770104.txt
pypef/ml/AAindex/TANS770105.txt
pypef/ml/AAindex/TANS770106.txt
pypef/ml/AAindex/TANS770107.txt
pypef/ml/AAindex/TANS770108.txt
pypef/ml/AAindex/TANS770109.txt
pypef/ml/AAindex/TANS770110.txt
pypef/ml/AAindex/TSAJ990101.txt
pypef/ml/AAindex/TSAJ990102.txt
pypef/ml/AAindex/VASM830101.txt
pypef/ml/AAindex/VASM830102.txt
pypef/ml/AAindex/VASM830103.txt
pypef/ml/AAindex/VELV850101.txt
pypef/ml/AAindex/VENT840101.txt
pypef/ml/AAindex/VHEG790101.txt
pypef/ml/AAindex/VINM940101.txt
pypef/ml/AAindex/VINM940102.txt
pypef/ml/AAindex/VINM940103.txt
pypef/ml/AAindex/VINM940104.txt
pypef/ml/AAindex/WARP780101.txt
pypef/ml/AAindex/WEBA780101.txt
pypef/ml/AAindex/WERD780101.txt
pypef/ml/AAindex/WERD780102.txt
pypef/ml/AAindex/WERD780103.txt
pypef/ml/AAindex/WERD780104.txt
pypef/ml/AAindex/WILM950101.txt
pypef/ml/AAindex/WILM950102.txt
pypef/ml/AAindex/WILM950103.txt
pypef/ml/AAindex/WILM950104.txt
pypef/ml/AAindex/WIMW960101.txt
pypef/ml/AAindex/WOEC730101.txt
pypef/ml/AAindex/WOLR790101.txt
pypef/ml/AAindex/WOLR810101.txt
pypef/ml/AAindex/WOLS870101.txt
pypef/ml/AAindex/WOLS870102.txt
pypef/ml/AAindex/WOLS870103.txt
pypef/ml/AAindex/YANJ020101.txt
pypef/ml/AAindex/YUTK870101.txt
pypef/ml/AAindex/YUTK870102.txt
pypef/ml/AAindex/YUTK870103.txt
pypef/ml/AAindex/YUTK870104.txt
pypef/ml/AAindex/ZASB820101.txt
pypef/ml/AAindex/ZHOH040101.txt
pypef/ml/AAindex/ZHOH040102.txt
pypef/ml/AAindex/ZHOH040103.txt
pypef/ml/AAindex/ZIMJ680101.txt
pypef/ml/AAindex/ZIMJ680102.txt
pypef/ml/AAindex/ZIMJ680103.txt
pypef/ml/AAindex/ZIMJ680104.txt
pypef/ml/AAindex/ZIMJ680105.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_12_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_13_0_4.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_13_1_3.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_13_2_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_14_0_3.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_14_1_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_15_0_3.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_16_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_17_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_17_1_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_18_0_3.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_18_1_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_18_2_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_18_3_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_1_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_2_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_2_1_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_2_2_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_2_3_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_4_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_4_1_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_5_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_7_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_7_1_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_7_2_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_7_3_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_7_4_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_8_0_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_9_0_7.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_9_1_4.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_9_2_2.txt
pypef/ml/AAindex/Refined_cluster_indices_r0.93_r0.97/0.93_0.97_9_3_2.txt
pypef/utils/__init__.py
pypef/utils/directed_evolution.py
pypef/utils/learning_test_sets.py
pypef/utils/low_n_mutation_extrapolation.py
pypef/utils/performance.py
pypef/utils/plot.py
pypef/utils/prediction_sets.py
pypef/utils/sto2a2m.py
pypef/utils/to_file.py
pypef/utils/utils_run.py
pypef/utils/variant_data.py