"""
This module contains the preprocessing functions for the pyparti analysis pipeline.
"""

from .utils import filter_adata_by_percentiles

from .preprocess import (
    preprocess_entire_adata_for_parti,
    preprocess_adata_subset_for_parti,
    preprocess_adata_dict_for_parti,
    protein_coding,
    genes_artefact,
)

__all__ = [
    # utils
    "filter_adata_by_percentiles",

    # preprocess
    "preprocess_entire_adata_for_parti",
    "preprocess_adata_subset_for_parti",
    "preprocess_adata_dict_for_parti",

    # dat (gene lists)
    "protein_coding",
    "genes_artefact",
]
