LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
bin/importdata.py
bin/map_to_closest_seq
bin/oma2hdf
pyoma/__init__.py
pyoma/common.py
pyoma/hpc.py
pyoma.egg-info/PKG-INFO
pyoma.egg-info/SOURCES.txt
pyoma.egg-info/dependency_links.txt
pyoma.egg-info/requires.txt
pyoma.egg-info/top_level.txt
pyoma/application/__init__.py
pyoma/application/enrichment.py
pyoma/browser/KmerEncoder.py
pyoma/browser/OrthoXMLSplitter.py
pyoma/browser/__init__.py
pyoma/browser/ancestral_genome.py
pyoma/browser/ancestral_synteny.py
pyoma/browser/check_db_consistency.py
pyoma/browser/compute_cache.py
pyoma/browser/convert.drw
pyoma/browser/convert.py
pyoma/browser/convert_omastandalone.drw
pyoma/browser/convert_omastandalone.py
pyoma/browser/db.py
pyoma/browser/db_contrib.py
pyoma/browser/decorators.py
pyoma/browser/exceptions.py
pyoma/browser/geneontology.py
pyoma/browser/hoghelper.py
pyoma/browser/hogidmap.py
pyoma/browser/homoeologs.py
pyoma/browser/idmapper.py
pyoma/browser/linkout.py
pyoma/browser/locus_parser.py
pyoma/browser/models.py
pyoma/browser/sanitychecks.py
pyoma/browser/search.py
pyoma/browser/suffixsearch.py
pyoma/browser/synteny.py
pyoma/browser/tablefmt.py
pyoma/browser/xref_contrib.py
pyoma/browser/hogprofile/__init__.py
pyoma/browser/hogprofile/build.py
pyoma/browser/hogprofile/hashutils.py
pyoma/browser/hogprofile/pyhamutils.py
pyoma/browser/hogprofile/query.py
pyoma/browser/hogprofile/tree_helper.py
pyoma/inference/__init__.py
pyoma/inference/algo.py
pyoma/inference/db.py
pyoma/inference/tabledef.py
pyoma/orthoxml/__init__.py
pyoma/orthoxml/compare.py
tests/test_common.py
tests/application/__init__.py
tests/application/test_enrichment.py
tests/browser/__init__.py
tests/browser/test_compare_hog_levels.py
tests/browser/test_db.py
tests/browser/test_hoghelper.py
tests/browser/test_hogidmap.py
tests/browser/test_import.py
tests/browser/test_locusparser.py
tests/browser/test_models.py
tests/browser/test_orthoxmlsplitter.py
tests/browser/test_performance_bigdb.py
tests/browser/test_search.py
tests/browser/test_suffixsearch.py
tests/browser/test_xref_helper.py
tests/browser/test_xrefs.py
tests/inference/__init__.py
tests/inference/test_db.py