.readthedocs.yml
LICENSE
MANIFEST.in
README.rst
pyproject.toml
setup.cfg
tox.ini
docs/source/conf.py
docs/source/index.rst
docs/source/logo.png
docs/source/api/pyobo.Canonicalizer.rst
docs/source/api/pyobo.Obo.rst
docs/source/api/pyobo.OboNormalizer.rst
docs/source/api/pyobo.Reference.rst
docs/source/api/pyobo.Synonym.rst
docs/source/api/pyobo.SynonymTypeDef.rst
docs/source/api/pyobo.Term.rst
docs/source/api/pyobo.TypeDef.rst
docs/source/api/pyobo.ensure_path.rst
docs/source/api/pyobo.from_obo_path.rst
docs/source/api/pyobo.from_obonet.rst
docs/source/api/pyobo.get_alts_to_id.rst
docs/source/api/pyobo.get_ancestors.rst
docs/source/api/pyobo.get_definition.rst
docs/source/api/pyobo.get_descendants.rst
docs/source/api/pyobo.get_equivalent.rst
docs/source/api/pyobo.get_filtered_properties_df.rst
docs/source/api/pyobo.get_filtered_properties_mapping.rst
docs/source/api/pyobo.get_filtered_properties_multimapping.rst
docs/source/api/pyobo.get_filtered_relations_df.rst
docs/source/api/pyobo.get_filtered_xrefs.rst
docs/source/api/pyobo.get_hierarchy.rst
docs/source/api/pyobo.get_id_definition_mapping.rst
docs/source/api/pyobo.get_id_multirelations_mapping.rst
docs/source/api/pyobo.get_id_name_mapping.rst
docs/source/api/pyobo.get_id_species_mapping.rst
docs/source/api/pyobo.get_id_synonyms_mapping.rst
docs/source/api/pyobo.get_id_to_alts.rst
docs/source/api/pyobo.get_ids.rst
docs/source/api/pyobo.get_name.rst
docs/source/api/pyobo.get_name_by_curie.rst
docs/source/api/pyobo.get_name_id_mapping.rst
docs/source/api/pyobo.get_ontology.rst
docs/source/api/pyobo.get_primary_curie.rst
docs/source/api/pyobo.get_primary_identifier.rst
docs/source/api/pyobo.get_priority_curie.rst
docs/source/api/pyobo.get_properties.rst
docs/source/api/pyobo.get_properties_df.rst
docs/source/api/pyobo.get_property.rst
docs/source/api/pyobo.get_relation.rst
docs/source/api/pyobo.get_relation_mapping.rst
docs/source/api/pyobo.get_relations_df.rst
docs/source/api/pyobo.get_species.rst
docs/source/api/pyobo.get_sssom_df.rst
docs/source/api/pyobo.get_subhierarchy.rst
docs/source/api/pyobo.get_synonyms.rst
docs/source/api/pyobo.get_typedef_df.rst
docs/source/api/pyobo.get_version.rst
docs/source/api/pyobo.get_xref.rst
docs/source/api/pyobo.get_xrefs.rst
docs/source/api/pyobo.get_xrefs_df.rst
docs/source/api/pyobo.ground.rst
docs/source/api/pyobo.has_ancestor.rst
docs/source/api/pyobo.has_nomenclature_plugin.rst
docs/source/api/pyobo.has_xref_plugin.rst
docs/source/api/pyobo.is_descendent.rst
docs/source/api/pyobo.iter_nomenclature_plugins.rst
docs/source/api/pyobo.iter_xref_plugins.rst
docs/source/api/pyobo.normalize_curie.rst
docs/source/api/pyobo.parse_results_from_obo.rst
docs/source/api/pyobo.run_nomenclature_plugin.rst
docs/source/api/pyobo.run_xref_plugin.rst
src/pyobo/__init__.py
src/pyobo/__main__.py
src/pyobo/aws.py
src/pyobo/constants.py
src/pyobo/getters.py
src/pyobo/gilda_utils.py
src/pyobo/identifier_utils.py
src/pyobo/mocks.py
src/pyobo/normalizer.py
src/pyobo/obographs.py
src/pyobo/plugins.py
src/pyobo/reader.py
src/pyobo/resource_utils.py
src/pyobo/version.py
src/pyobo.egg-info/PKG-INFO
src/pyobo.egg-info/SOURCES.txt
src/pyobo.egg-info/dependency_links.txt
src/pyobo.egg-info/entry_points.txt
src/pyobo.egg-info/not-zip-safe
src/pyobo.egg-info/requires.txt
src/pyobo.egg-info/top_level.txt
src/pyobo/api/__init__.py
src/pyobo/api/alts.py
src/pyobo/api/hierarchy.py
src/pyobo/api/metadata.py
src/pyobo/api/names.py
src/pyobo/api/properties.py
src/pyobo/api/relations.py
src/pyobo/api/species.py
src/pyobo/api/typedefs.py
src/pyobo/api/utils.py
src/pyobo/api/xrefs.py
src/pyobo/apps/__init__.py
src/pyobo/apps/cli.py
src/pyobo/apps/gilda/__init__.py
src/pyobo/apps/gilda/__main__.py
src/pyobo/apps/gilda/app.py
src/pyobo/apps/gilda/cli.py
src/pyobo/apps/gilda/templates/base.html
src/pyobo/apps/gilda/templates/home.html
src/pyobo/apps/gilda/templates/matches.html
src/pyobo/apps/mapper/__init__.py
src/pyobo/apps/mapper/__main__.py
src/pyobo/apps/mapper/cli.py
src/pyobo/apps/mapper/mapper.py
src/pyobo/apps/mapper/templates/base.html
src/pyobo/apps/mapper/templates/mapper_home.html
src/pyobo/cli/__init__.py
src/pyobo/cli/aws.py
src/pyobo/cli/cli.py
src/pyobo/cli/database.py
src/pyobo/cli/lookup.py
src/pyobo/cli/utils.py
src/pyobo/registries/__init__.py
src/pyobo/registries/metaregistry.json
src/pyobo/registries/metaregistry.py
src/pyobo/resources/__init__.py
src/pyobo/resources/ncbitaxon.py
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src/pyobo/sources/antibodyregistry.py
src/pyobo/sources/biogrid.py
src/pyobo/sources/ccle.py
src/pyobo/sources/cgnc.py
src/pyobo/sources/chebi.py
src/pyobo/sources/chembl.py
src/pyobo/sources/complexportal.py
src/pyobo/sources/conso.py
src/pyobo/sources/cpt.py
src/pyobo/sources/cvx.py
src/pyobo/sources/depmap.py
src/pyobo/sources/dictybase_gene.py
src/pyobo/sources/drugbank.py
src/pyobo/sources/drugbank_salt.py
src/pyobo/sources/drugcentral.py
src/pyobo/sources/expasy.py
src/pyobo/sources/famplex.py
src/pyobo/sources/flybase.py
src/pyobo/sources/gmt_utils.py
src/pyobo/sources/go.py
src/pyobo/sources/gwascentral_phenotype.py
src/pyobo/sources/gwascentral_study.py
src/pyobo/sources/hgnc.py
src/pyobo/sources/hgncgenefamily.py
src/pyobo/sources/icd10.py
src/pyobo/sources/icd11.py
src/pyobo/sources/icd_utils.py
src/pyobo/sources/interpro.py
src/pyobo/sources/itis.py
src/pyobo/sources/mesh.py
src/pyobo/sources/mgi.py
src/pyobo/sources/mirbase.py
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src/pyobo/sources/mirbase_family.py
src/pyobo/sources/mirbase_mature.py
src/pyobo/sources/msigdb.py
src/pyobo/sources/ncbigene.py
src/pyobo/sources/npass.py
src/pyobo/sources/pathbank.py
src/pyobo/sources/pfam.py
src/pyobo/sources/pfam_clan.py
src/pyobo/sources/pid.py
src/pyobo/sources/pombase.py
src/pyobo/sources/pubchem.py
src/pyobo/sources/reactome.py
src/pyobo/sources/rgd.py
src/pyobo/sources/rhea.py
src/pyobo/sources/sgd.py
src/pyobo/sources/slm.py
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src/pyobo/sources/wikipathways.py
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src/pyobo/sources/kegg/genes.py
src/pyobo/sources/kegg/genome.py
src/pyobo/sources/kegg/pathway.py
src/pyobo/sources/selventa/__init__.py
src/pyobo/sources/selventa/schem.py
src/pyobo/sources/selventa/scomp.py
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src/pyobo/sources/umls/__init__.py
src/pyobo/sources/umls/__main__.py
src/pyobo/sources/umls/synonym_types.tsv
src/pyobo/sources/umls/umls.py
src/pyobo/sources/uniprot/__init__.py
src/pyobo/sources/uniprot/uniprot.py
src/pyobo/sources/uniprot/uniprot_ptm.py
src/pyobo/ssg/__init__.py
src/pyobo/ssg/base.html
src/pyobo/ssg/index.html
src/pyobo/ssg/term.html
src/pyobo/ssg/typedef.html
src/pyobo/struct/__init__.py
src/pyobo/struct/reference.py
src/pyobo/struct/struct.py
src/pyobo/struct/typedef.py
src/pyobo/struct/utils.py
src/pyobo/utils/__init__.py
src/pyobo/utils/cache.py
src/pyobo/utils/io.py
src/pyobo/utils/iter.py
src/pyobo/utils/misc.py
src/pyobo/utils/ndex_utils.py
src/pyobo/utils/path.py
src/pyobo/xrefdb/__init__.py
src/pyobo/xrefdb/bengo.py
src/pyobo/xrefdb/canonicalizer.py
src/pyobo/xrefdb/priority.py
src/pyobo/xrefdb/xrefs_pipeline.py
src/pyobo/xrefdb/sources/__init__.py
src/pyobo/xrefdb/sources/biomappings.py
src/pyobo/xrefdb/sources/cbms2019.py
src/pyobo/xrefdb/sources/chembl.py
src/pyobo/xrefdb/sources/compath.py
src/pyobo/xrefdb/sources/famplex.py
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src/pyobo/xrefdb/sources/intact.py
src/pyobo/xrefdb/sources/ncit.py
src/pyobo/xrefdb/sources/pubchem.py
src/pyobo/xrefdb/sources/wikidata.py
tests/__init__.py
tests/constants.py
tests/test_alt_ids.py
tests/test_caches.py
tests/test_extract.py
tests/test_get.py
tests/test_get_miriam_url.py
tests/test_gmt.py
tests/test_ground.py
tests/test_mapper.py
tests/test_struct.py
tests/test_utils.py
tests/resources/citations.txt
tests/resources/test_chebi.obo
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tests/resources/test_wikipathways.gmt
tests/test_sources/__init__.py
tests/test_sources/test_famplex.py