#!/usr/bin/env python
import sys
import pymzml

def main(mzml_file):
    '''
    Basic example script to demonstrate the usage of pymzML. Requires a mzML 
    file as first argument.

    usage:
    
        ./simple_parser.py <path_to_mzml_file>

    Note:

        This script uses the new syntax with the MS level being a property of
        the spectrum class ( Spectrum.ms_level ). The old syntax can be found in
        the script simple_parser_v2.py where the MS level can be queried as a key
        (Spectrum['ms level'])


    '''
    i = 0
    run = pymzml.run.Reader(mzml_file)
    for n, spec in enumerate( run ):
        print(
            'Spectrum {0}, MS level {ms_level}'.format(
                spec['id'],
                ms_level = spec['ms level'],
                #scan_time = spec['scan_time']
            ),
            end='\r'
        )
        i = sum(spec.i)
    print(
        'Parsed {0} spectra from file {1}'.format(
            n,
            mzml_file
        )
    )
    print()


if __name__ == '__main__':
    if len(sys.argv) < 2:
        print(main.__doc__)
        exit()
    mzml_file = sys.argv[1]
    main(mzml_file)
