LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
pymisha/__init__.py
pymisha/_crc64.py
pymisha/_name_validation.py
pymisha/_pymisha.pyi
pymisha/_quadtree.py
pymisha/_safe_eval.py
pymisha/_safe_pickle.py
pymisha/_shared.py
pymisha/analysis.py
pymisha/dataset.py
pymisha/db.py
pymisha/db_attrs.py
pymisha/db_create.py
pymisha/expr.py
pymisha/extract.py
pymisha/gdir.py
pymisha/gsynth.py
pymisha/intervals.py
pymisha/liftover.py
pymisha/lookup.py
pymisha/sequence.py
pymisha/summary.py
pymisha/tracks.py
pymisha/vtracks.py
pymisha.egg-info/PKG-INFO
pymisha.egg-info/SOURCES.txt
pymisha.egg-info/dependency_links.txt
pymisha.egg-info/not-zip-safe
pymisha.egg-info/requires.txt
pymisha.egg-info/top_level.txt
src/BinFinder.cpp
src/BinFinder.h
src/BinsManager.h
src/BufferedFile.cpp
src/BufferedFile.h
src/CRC64.h
src/DnaPSSM.cpp
src/DnaPSSM.h
src/GInterval.cpp
src/GInterval.h
src/GenomeChromKey.h
src/GenomeIndex.cpp
src/GenomeIndex.h
src/GenomeSeqFetch.cpp
src/GenomeSeqFetch.h
src/GenomeSeqScorer.cpp
src/GenomeSeqScorer.h
src/GenomeTrack.cpp
src/GenomeTrack.h
src/GenomeTrack1D.h
src/GenomeTrackFixedBin.cpp
src/GenomeTrackFixedBin.h
src/GenomeTrackSparse.cpp
src/GenomeTrackSparse.h
src/GenomeUtils.cpp
src/GenomeUtils.h
src/HashFunc.h
src/IncrementalWilcox.cpp
src/IncrementalWilcox.h
src/KmerCounter.cpp
src/KmerCounter.h
src/MaskUtils.h
src/MaskedBpCounter.cpp
src/MaskedBpCounter.h
src/PMDataFrame.cpp
src/PMDataFrame.h
src/PMDb.cpp
src/PMDb.h
src/PMFindNeighbors.cpp
src/PMGsynth.cpp
src/PMObject.h
src/PMStubs.cpp
src/PMTrackCreate.cpp
src/PMTrackExpressionIterator.cpp
src/PMTrackExpressionIterator.h
src/PMTrackExpressionScanner.cpp
src/PMTrackExpressionScanner.h
src/PMTrackExpressionVars.cpp
src/PMTrackExpressionVars.h
src/PMTrackIndexedFormat.cpp
src/PMVTrack.cpp
src/PMWilcox.cpp
src/PWMScorer.cpp
src/PWMScorer.h
src/RaList.h
src/Random.h
src/RandomShuffle.h
src/Segment.h
src/SegmentFinder.h
src/StratifiedMarkovModel.cpp
src/StratifiedMarkovModel.h
src/StreamPercentiler.h
src/StreamSampler.h
src/TGLException.cpp
src/TGLException.h
src/TrackIndex.cpp
src/TrackIndex.h
src/config.h
src/pmutils.h
src/port.h
src/pymisha.cpp
src/pymisha.h
src/pymisha_init.cpp
src/util.h
src/utils/RunningLogSumExp.h
src/utils/RunningMaxDeque.h
tests/test_band_intersect.py
tests/test_benchmarks.py
tests/test_dataset_and_alias.py
tests/test_dataset_resolution.py
tests/test_db_admin.py
tests/test_expr_aliasing.py
tests/test_fd_safety.py
tests/test_gbins.py
tests/test_gcis_decay.py
tests/test_gcor.py
tests/test_gdb_convert_to_indexed.py
tests/test_gdb_create.py
tests/test_gdb_export_fasta.py
tests/test_gdb_info.py
tests/test_gdir.py
tests/test_gdist.py
tests/test_gdist_vtrack_streaming.py
tests/test_gextract.py
tests/test_gextract_2d.py
tests/test_gextract_colnames.py
tests/test_gintervals.py
tests/test_gintervals_constructors.py
tests/test_gintervals_import_genes.py
tests/test_gintervals_load_save.py
tests/test_gintervals_management.py
tests/test_gintervals_mapply.py
tests/test_gintervals_neighbors.py
tests/test_gintervals_neighbors_directional.py
tests/test_gintervals_summary_quantiles.py
tests/test_gintervals_update.py
tests/test_gintervals_utils.py
tests/test_giterator_cartesian_grid.py
tests/test_glookup.py
tests/test_glookup_streaming.py
tests/test_golden_master.py
tests/test_golden_master_advanced_intervals.py
tests/test_golden_master_liftover.py
tests/test_golden_master_sequence.py
tests/test_golden_master_stats.py
tests/test_golden_master_vtracks.py
tests/test_gpartition.py
tests/test_gquantiles.py
tests/test_gsample.py
tests/test_gsegment.py
tests/test_gseq.py
tests/test_gseq_kmer.py
tests/test_gseq_pwm.py
tests/test_gsummary.py
tests/test_gsynth.py
tests/test_gsynth_parallel.py
tests/test_gtrack_attr.py
tests/test_gtrack_attr_import.py
tests/test_gtrack_create_empty_indexed.py
tests/test_gtrack_create_pwm_energy.py
tests/test_gtrack_exists.py
tests/test_gtrack_lookup.py
tests/test_gtrack_ls.py
tests/test_gtrack_var.py
tests/test_gvtrack_filter.py
tests/test_gwilcox.py
tests/test_import_contacts.py
tests/test_init_exports.py
tests/test_intervals_2d.py
tests/test_intervals_indexed.py
tests/test_iterator_policy.py
tests/test_liftover.py
tests/test_multi_db.py
tests/test_multitask.py
tests/test_optimization_summary.py
tests/test_pwm_sliding_window.py
tests/test_pwm_spatial.py
tests/test_security_robustness.py
tests/test_track2d.py
tests/test_track_create_import.py
tests/test_track_indexed.py
tests/test_track_liftover.py
tests/test_track_modify_smooth.py
tests/test_vtrack_iterator_2d.py
tests/test_vtrack_lse.py
tests/test_vtracks.py