README.md
pyproject.toml
src/pymethyl2sam/__init__.py
src/pymethyl2sam.egg-info/PKG-INFO
src/pymethyl2sam.egg-info/SOURCES.txt
src/pymethyl2sam.egg-info/dependency_links.txt
src/pymethyl2sam.egg-info/requires.txt
src/pymethyl2sam.egg-info/top_level.txt
src/pymethyl2sam/core/__init__.py
src/pymethyl2sam/core/errors.py
src/pymethyl2sam/core/genomics.py
src/pymethyl2sam/core/reference_genome.py
src/pymethyl2sam/core/sequencing.py
src/pymethyl2sam/io/__init__.py
src/pymethyl2sam/io/genome_loader.py
src/pymethyl2sam/simulator/__init__.py
src/pymethyl2sam/simulator/simulator.py
src/pymethyl2sam/simulator/summary.py
src/pymethyl2sam/utils/__init__.py
src/pymethyl2sam/utils/constants.py
src/pymethyl2sam/utils/logging.py
src/pymethyl2sam/utils/pysam.py
tests/test_bam_generation.py
tests/test_core_errors.py
tests/test_core_genomics.py
tests/test_core_sequencing.py
tests/test_genome_loader.py
tests/test_logging.py
tests/test_simulator_summary.py