from .read_write import read_10X, read_10X_h5, read_10X_visium
from .preprocessing import make_feature_matrix, create_liger, normalize, select_genes, scale_not_center
from .factorization import optimize_ALS, iNMF_HALS, online_iNMF
from .clustering import louvain_cluster, leiden_cluster
from .plotting import plot_by_dataset_and_cluster, plot_gene, plot_gene_loadings, plot_spatial
from .tools import quantile_norm, run_umap, run_wilcoxon

