.coveragerc
.gitignore
AUTHORS.TXT
CONTRIBUTING.rst
LICENSE
MANIFEST.in
Makefile
README.rst
pyproject.toml
setup.cfg
setup.py
.github/dependabot.yml
.github/workflows/build_docs.yml
.github/workflows/pypi_cd.yml
.github/workflows/tox_ci.yml
docs/.gitkeep
pyiohat/__init__.py
pyiohat/unify.py
pyiohat/utils.py
pyiohat/version.txt
pyiohat.egg-info/PKG-INFO
pyiohat.egg-info/SOURCES.txt
pyiohat.egg-info/dependency_links.txt
pyiohat.egg-info/requires.txt
pyiohat.egg-info/top_level.txt
pyiohat/parsers/__init__.py
pyiohat/parsers/base_parser.py
pyiohat/parsers/ident_base_parser.py
pyiohat/parsers/misc.py
pyiohat/parsers/quant_base_parser.py
pyiohat/parsers/ident/__init__.py
pyiohat/parsers/ident/comet_2020_01_4_parser.py
pyiohat/parsers/ident/dummy_parser.py
pyiohat/parsers/ident/mascot_2_6_2_parser.py
pyiohat/parsers/ident/msamanda_2_parser.py
pyiohat/parsers/ident/msfragger_3_parser.py
pyiohat/parsers/ident/msgfplus_2021_03_22_parser.py
pyiohat/parsers/ident/omssa_2_1_9_parser.py
pyiohat/parsers/ident/xtandem_alanine.py
pyiohat/parsers/models/base_parser_model.json
pyiohat/parsers/models/ident_parser_model.json
pyiohat/parsers/models/quant_parser_model.json
pyiohat/parsers/quant/__init__.py
pyiohat/parsers/quant/flash_lfq_1_2_0_parser.py
pyiohat/parsers/quant/tmt_quant_parser_1_0_0.py
tests/conftest.py
tests/test_engine_parser_base_parser.py
tests/test_engine_parser_ident_base_parser.py
tests/test_engine_parser_quant_base_parser.py
tests/test_unify.py
tests/data/BSA.fasta
tests/data/BSA1_comet_2020_01_4.mzid
tests/data/BSA1_mascot_2_6_2.dat
tests/data/BSA1_msamanda_2_0_0_17442.csv
tests/data/BSA1_msfragger_3.tsv
tests/data/BSA1_msgfplus_2021_03_22.mzid
tests/data/BSA1_msgfplus_2021_03_22_unknown_mod.mzid
tests/data/BSA1_open_search.msfragger.tsv
tests/data/BSA1_ursgal_lookup.csv
tests/data/BSA1_ursgal_lookup_no_precursor_mz.csv
tests/data/BSA1_xtandem_alanine.xml
tests/data/BSA2_ursgal_lookup.csv
tests/data/TMT16_ursgal_lookup.csv
tests/data/_ursgal_lookup.csv
tests/data/custom_mod.xml
tests/data/flash_lfq_1_2_0_quantified_peaks.tsv
tests/data/human_ecoli_test_target_decoy.fasta
tests/data/multiple_psms_xtandem.xml
tests/data/test_Creinhardtii_QE_pH11_msfragger_3.tsv
tests/data/test_Creinhardtii_QE_pH11_omssa_2_1_9.csv
tests/data/test_Creinhardtii_QE_pH11_xtandem_alanine.xml
tests/data/test_Creinhardtii_target_decoy.fasta
tests/data/test_positions_msfragger.tsv
tests/data/mapping_data/trunc_comet.mzid
tests/data/mapping_data/trunc_fasta.protein.faa
tests/data/mapping_data/trunc_meta.spectra_meta.csv
tests/data/mapping_data/trunc_msfragger.tsv
tests/data/mapping_data/trunc_msgfplus.mzid
tests/data/mapping_data/trunc_omssa.csv
tests/data/mapping_data/trunc_tmt_quant.csv
tests/data/mapping_data/trunc_xtandem.xml
tests/ident/test_engine_parser_comet_2020_01_04.py
tests/ident/test_engine_parser_mascot_2_6_2.py
tests/ident/test_engine_parser_msamanda.py
tests/ident/test_engine_parser_msfragger_3.py
tests/ident/test_engine_parser_msgfplus_2021_03_22.py
tests/ident/test_engine_parser_omssa.py
tests/ident/test_engine_parser_xtandem_alanine.py
tests/mapping/test_TMTpro_mapping.py
tests/parsers/misc/test_get_atom_counts.py
tests/quant/test_engine_parser_flash_lfq_1_2_0.py
tests/quant/test_tmt_quant_1_0_0.py