LICENSE.md
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
pyinseq/VERSION
pyinseq/__init__.py
pyinseq/analyze.py
pyinseq/config.py
pyinseq/demultiplex.py
pyinseq/gbk_convert.py
pyinseq/logger.py
pyinseq/map_reads.py
pyinseq/parsers.py
pyinseq/pipeline.py
pyinseq/process_mapping.py
pyinseq/settings.py
pyinseq/utils.py
pyinseq.egg-info/PKG-INFO
pyinseq.egg-info/SOURCES.txt
pyinseq.egg-info/dependency_links.txt
pyinseq.egg-info/not-zip-safe
pyinseq.egg-info/requires.txt
pyinseq.egg-info/top_level.txt
pyinseq/envs/bowtie.yaml
pyinseq/tests/__init__.py
pyinseq/tests/test_functions.py
pyinseq/tests/test_script.py
pyinseq/tests/test_utils.py
pyinseq/workflows/__init__.py
pyinseq/workflows/DemultiplexWorkflow/Snakefile
pyinseq/workflows/GenomeprepWorkflow/Snakefile
pyinseq/workflows/PyinseqWorkflow/Snakefile
scripts/pyinseq