HMMER (`pyhmmer.hmmer`)
=======================

.. currentmodule:: pyhmmer.hmmer

.. automodule:: pyhmmer.hmmer


Sequence Searches
-----------------

.. toctree::
    :hidden:
    :caption: Sequence Searches

    Sequence Searches <seq>

.. autosummary::

    phmmer
    nhmmer


Profile Searches
----------------

.. toctree::
    :hidden:
    :caption: Profile Searches

    Profile Searches <profile>

.. autosummary::

    hmmsearch
    hmmscan


Iterative Searches
------------------

.. toctree::
    :hidden:
    :caption: Iterative Searches

    IterativeSearch <iter>

.. autosummary::

    jackhmmer


Utilities
---------

.. toctree::
    :hidden:
    :caption: Utilities

    Utilities <utils>

.. autosummary::

    hmmpress
    hmmalign







