.flake8
.flake8-critical
.gitattributes
.gitignore
.lint.conf
.travis.yml
CONTRIBUTING.md
LICENSE
MANIFEST.in
NOTICE
README.md
install_locally.py
optional-requirements.txt
requirements.txt
rtd-requirements.txt
setup.cfg
setup.py
./pygsti/__init__.py
./pygsti/_version.py
./pygsti/algorithms/__init__.py
./pygsti/algorithms/compilers.py
./pygsti/algorithms/contract.py
./pygsti/algorithms/core.py
./pygsti/algorithms/directx.py
./pygsti/algorithms/fiducialpairreduction.py
./pygsti/algorithms/fiducialselection.py
./pygsti/algorithms/gaugeopt.py
./pygsti/algorithms/germselection.py
./pygsti/algorithms/grammatrix.py
./pygsti/algorithms/grasp.py
./pygsti/algorithms/randomcircuit.py
./pygsti/algorithms/rbfit.py
./pygsti/algorithms/robust_phase_estimation.py
./pygsti/algorithms/scoring.py
./pygsti/construction/__init__.py
./pygsti/construction/circuitconstruction.py
./pygsti/construction/datasetconstruction.py
./pygsti/construction/gateconstruction.py
./pygsti/construction/modelconstruction.py
./pygsti/construction/nqnoiseconstruction.py
./pygsti/construction/qutrit.py
./pygsti/construction/rpeconstruction.py
./pygsti/construction/stdlists.py
./pygsti/construction/stdtarget.py
./pygsti/drivers/__init__.py
./pygsti/drivers/bootstrap.py
./pygsti/drivers/longsequence.py
./pygsti/extras/__init__.py
./pygsti/extras/crosstalk/__init__.py
./pygsti/extras/crosstalk/core.py
./pygsti/extras/crosstalk/objects.py
./pygsti/extras/devices/__init__.py
./pygsti/extras/devices/devcore.py
./pygsti/extras/devices/ibmq_burlington.py
./pygsti/extras/devices/ibmq_essex.py
./pygsti/extras/devices/ibmq_london.py
./pygsti/extras/devices/ibmq_melbourne.py
./pygsti/extras/devices/ibmq_ourense.py
./pygsti/extras/devices/ibmq_rueschlikon.py
./pygsti/extras/devices/ibmq_tenerife.py
./pygsti/extras/devices/ibmq_vigo.py
./pygsti/extras/devices/ibmq_yorktown.py
./pygsti/extras/devices/rigetti_agave.py
./pygsti/extras/devices/rigetti_aspen4.py
./pygsti/extras/devices/rigetti_aspen6.py
./pygsti/extras/devices/rigetti_aspen7.py
./pygsti/extras/drift/__init__.py
./pygsti/extras/drift/core.py
./pygsti/extras/drift/driftreport.py
./pygsti/extras/drift/probtrajectory.py
./pygsti/extras/drift/signal.py
./pygsti/extras/drift/stabilityanalyzer.py
./pygsti/extras/drift/trmodel.py
./pygsti/extras/idletomography/__init__.py
./pygsti/extras/idletomography/idtcore.py
./pygsti/extras/idletomography/idtreport.py
./pygsti/extras/idletomography/idtresults.py
./pygsti/extras/idletomography/idttools.py
./pygsti/extras/idletomography/pauliobjs.py
./pygsti/extras/rb/__init__.py
./pygsti/extras/rb/benchmarker.py
./pygsti/extras/rb/dataset.py
./pygsti/extras/rb/io.py
./pygsti/extras/rb/simulate.py
./pygsti/extras/rpe/__init__.py
./pygsti/extras/rpe/rpeconfig.py
./pygsti/extras/rpe/rpeconfig_GxPi2_GyPi2_00.py
./pygsti/extras/rpe/rpeconfig_GxPi2_GyPi2_UpDn.py
./pygsti/extras/rpe/rpeconstruction.py
./pygsti/extras/rpe/rpetools.py
./pygsti/io/__init__.py
./pygsti/io/json.py
./pygsti/io/jsoncodec.py
./pygsti/io/legacyio.py
./pygsti/io/loaders.py
./pygsti/io/metadir.py
./pygsti/io/msgpack.py
./pygsti/io/stdinput.py
./pygsti/io/writers.py
./pygsti/io/circuitparser/__init__.py
./pygsti/io/circuitparser/fastcircuitparser.pyx
./pygsti/io/circuitparser/slowcircuitparser.py
./pygsti/modelpacks/__init__.py
./pygsti/modelpacks/_modelpack.py
./pygsti/modelpacks/smq1Q_XY.py
./pygsti/modelpacks/smq1Q_XYI.py
./pygsti/modelpacks/smq1Q_XYZI.py
./pygsti/modelpacks/smq1Q_XZ.py
./pygsti/modelpacks/smq1Q_Xpi2_rpe.py
./pygsti/modelpacks/smq1Q_Ypi2_rpe.py
./pygsti/modelpacks/smq1Q_ZN.py
./pygsti/modelpacks/smq1Q_pi4_pi2_XZ.py
./pygsti/modelpacks/smq2Q_XXII.py
./pygsti/modelpacks/smq2Q_XXYYII.py
./pygsti/modelpacks/smq2Q_XY.py
./pygsti/modelpacks/smq2Q_XYCNOT.py
./pygsti/modelpacks/smq2Q_XYCPHASE.py
./pygsti/modelpacks/smq2Q_XYI.py
./pygsti/modelpacks/smq2Q_XYI1.py
./pygsti/modelpacks/smq2Q_XYI2.py
./pygsti/modelpacks/smq2Q_XYICNOT.py
./pygsti/modelpacks/smq2Q_XYICPHASE.py
./pygsti/modelpacks/smq2Q_XYZICNOT.py
./pygsti/modelpacks/legacy/__init__.py
./pygsti/modelpacks/legacy/std1Q_Cliffords.py
./pygsti/modelpacks/legacy/std1Q_XY.py
./pygsti/modelpacks/legacy/std1Q_XYI.py
./pygsti/modelpacks/legacy/std1Q_XYZI.py
./pygsti/modelpacks/legacy/std1Q_XZ.py
./pygsti/modelpacks/legacy/std1Q_ZN.py
./pygsti/modelpacks/legacy/std1Q_pi4_pi2_XZ.py
./pygsti/modelpacks/legacy/std2Q_XXII.py
./pygsti/modelpacks/legacy/std2Q_XXYYII.py
./pygsti/modelpacks/legacy/std2Q_XY.py
./pygsti/modelpacks/legacy/std2Q_XYCNOT.py
./pygsti/modelpacks/legacy/std2Q_XYCPHASE.py
./pygsti/modelpacks/legacy/std2Q_XYI.py
./pygsti/modelpacks/legacy/std2Q_XYI1.py
./pygsti/modelpacks/legacy/std2Q_XYI2.py
./pygsti/modelpacks/legacy/std2Q_XYICNOT.py
./pygsti/modelpacks/legacy/std2Q_XYICPHASE.py
./pygsti/modelpacks/legacy/std2Q_XYZICNOT.py
./pygsti/modelpacks/legacy/stdQT_XYIMS.py
./pygsti/objects/__init__.py
./pygsti/objects/basis.py
./pygsti/objects/circuit.py
./pygsti/objects/circuitstructure.py
./pygsti/objects/cloudnoisemodel.py
./pygsti/objects/compilationlibrary.py
./pygsti/objects/confidenceregionfactory.py
./pygsti/objects/datacomparator.py
./pygsti/objects/dataset.py
./pygsti/objects/estimate.py
./pygsti/objects/evaltree.py
./pygsti/objects/explicitcalc.py
./pygsti/objects/explicitmodel.py
./pygsti/objects/forwardsim.py
./pygsti/objects/gaugegroup.py
./pygsti/objects/hypothesistest.py
./pygsti/objects/implicitmodel.py
./pygsti/objects/instrument.py
./pygsti/objects/label.py
./pygsti/objects/labeldicts.py
./pygsti/objects/layerlizard.py
./pygsti/objects/localnoisemodel.py
./pygsti/objects/mapevaltree.py
./pygsti/objects/mapforwardsim.py
./pygsti/objects/matrixevaltree.py
./pygsti/objects/matrixforwardsim.py
./pygsti/objects/model.py
./pygsti/objects/modelfunction.py
./pygsti/objects/modelmember.py
./pygsti/objects/multidataset.py
./pygsti/objects/objectivefns.py
./pygsti/objects/operation.py
./pygsti/objects/opfactory.py
./pygsti/objects/oplessmodel.py
./pygsti/objects/polynomial.py
./pygsti/objects/povm.py
./pygsti/objects/processorspec.py
./pygsti/objects/profiler.py
./pygsti/objects/protectedarray.py
./pygsti/objects/qubitgraph.py
./pygsti/objects/reportableqty.py
./pygsti/objects/results.py
./pygsti/objects/simplifierhelper.py
./pygsti/objects/smartcache.py
./pygsti/objects/spamvec.py
./pygsti/objects/stabilizer.py
./pygsti/objects/term.py
./pygsti/objects/termevaltree.py
./pygsti/objects/termforwardsim.py
./pygsti/objects/verbosityprinter.py
./pygsti/objects/wildcardbudget.py
./pygsti/objects/opcalc/__init__.py
./pygsti/objects/opcalc/fastopcalc.pyx
./pygsti/objects/opcalc/slowopcalc.py
./pygsti/objects/replib/__init__.py
./pygsti/objects/replib/fastreplib.pyx
./pygsti/objects/replib/fastreps.cpp
./pygsti/objects/replib/fastreps.h
./pygsti/objects/replib/slowreplib.py
./pygsti/optimize/__init__.py
./pygsti/optimize/customcg.py
./pygsti/optimize/customlm.py
./pygsti/optimize/optimize.py
./pygsti/protocols/__init__.py
./pygsti/protocols/gst.py
./pygsti/protocols/modeltest.py
./pygsti/protocols/protocol.py
./pygsti/protocols/rb.py
./pygsti/protocols/rpe.py
./pygsti/protocols/stability.py
./pygsti/protocols/treenode.py
./pygsti/report/__init__.py
./pygsti/report/autotitle.py
./pygsti/report/cell.py
./pygsti/report/colormaps.py
./pygsti/report/convert.py
./pygsti/report/factory.py
./pygsti/report/figure.py
./pygsti/report/formatter.py
./pygsti/report/formatters.py
./pygsti/report/html.py
./pygsti/report/latex.py
./pygsti/report/merge_helpers.py
./pygsti/report/mpl_colormaps.py
./pygsti/report/notebook.py
./pygsti/report/notebookcell.py
./pygsti/report/parse_notebook_text.py
./pygsti/report/plothelpers.py
./pygsti/report/plotly_plot_ex.py
./pygsti/report/python.py
./pygsti/report/report.py
./pygsti/report/reportables.py
./pygsti/report/row.py
./pygsti/report/table.py
./pygsti/report/textblock.py
./pygsti/report/workspace.py
./pygsti/report/workspaceplots.py
./pygsti/report/workspacetables.py
./pygsti/report/workspacetexts.py
./pygsti/report/section/__init__.py
./pygsti/report/section/datacomparison.py
./pygsti/report/section/drift.py
./pygsti/report/section/gauge.py
./pygsti/report/section/goodness.py
./pygsti/report/section/help.py
./pygsti/report/section/idle.py
./pygsti/report/section/meta.py
./pygsti/report/section/summary.py
./pygsti/report/templates/CodeCell.json
./pygsti/report/templates/Empty.ipynb
./pygsti/report/templates/MDcell.json
./pygsti/report/templates/standalone.html
./pygsti/report/templates/standalone.tex
./pygsti/report/templates/standard_pdf_report.tex
./pygsti/report/templates/drift_html_report/main.html
./pygsti/report/templates/drift_html_report/tabs/AjaxError.html
./pygsti/report/templates/drift_html_report/tabs/Drift.html
./pygsti/report/templates/idletomography_html_report/main.html
./pygsti/report/templates/idletomography_html_report/tabs/AjaxError.html
./pygsti/report/templates/idletomography_html_report/tabs/DataComparison.html
./pygsti/report/templates/idletomography_html_report/tabs/IdleTomography.html
./pygsti/report/templates/offline/README.txt
./pygsti/report/templates/offline/auto-render.min.js
./pygsti/report/templates/offline/jquery-3.2.1.min.js
./pygsti/report/templates/offline/jquery-ui.min.js
./pygsti/report/templates/offline/jupyterlibload.js
./pygsti/report/templates/offline/katex.css
./pygsti/report/templates/offline/katex.min.js
./pygsti/report/templates/offline/masonry.pkgd.min.js
./pygsti/report/templates/offline/plotly-latest.min.js
./pygsti/report/templates/offline/pygsti_dashboard.css
./pygsti/report/templates/offline/pygsti_dashboard.js
./pygsti/report/templates/offline/pygsti_dataviz.css
./pygsti/report/templates/offline/pygsti_fonts.css
./pygsti/report/templates/offline/pygsti_plotly_ex.js
./pygsti/report/templates/offline/require.min.js
./pygsti/report/templates/offline/smoothness-jquery-ui.css
./pygsti/report/templates/offline/fonts/KaTeX_AMS-Regular.eot
./pygsti/report/templates/offline/fonts/KaTeX_AMS-Regular.ttf
./pygsti/report/templates/offline/fonts/KaTeX_AMS-Regular.woff
./pygsti/report/templates/offline/fonts/KaTeX_AMS-Regular.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Caligraphic-Bold.eot
./pygsti/report/templates/offline/fonts/KaTeX_Caligraphic-Bold.ttf
./pygsti/report/templates/offline/fonts/KaTeX_Caligraphic-Bold.woff
./pygsti/report/templates/offline/fonts/KaTeX_Caligraphic-Bold.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Caligraphic-Regular.eot
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./pygsti/report/templates/offline/fonts/KaTeX_Caligraphic-Regular.woff
./pygsti/report/templates/offline/fonts/KaTeX_Caligraphic-Regular.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Fraktur-Bold.eot
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./pygsti/report/templates/offline/fonts/KaTeX_Fraktur-Bold.woff
./pygsti/report/templates/offline/fonts/KaTeX_Fraktur-Bold.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Fraktur-Regular.eot
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./pygsti/report/templates/offline/fonts/KaTeX_Fraktur-Regular.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Main-Bold.eot
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./pygsti/report/templates/offline/fonts/KaTeX_Main-Bold.woff
./pygsti/report/templates/offline/fonts/KaTeX_Main-Bold.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Main-Italic.eot
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./pygsti/report/templates/offline/fonts/KaTeX_Main-Italic.woff
./pygsti/report/templates/offline/fonts/KaTeX_Main-Italic.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Main-Regular.eot
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./pygsti/report/templates/offline/fonts/KaTeX_Main-Regular.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Math-BoldItalic.eot
./pygsti/report/templates/offline/fonts/KaTeX_Math-BoldItalic.ttf
./pygsti/report/templates/offline/fonts/KaTeX_Math-BoldItalic.woff
./pygsti/report/templates/offline/fonts/KaTeX_Math-BoldItalic.woff2
./pygsti/report/templates/offline/fonts/KaTeX_Math-Italic.eot
./pygsti/report/templates/offline/fonts/KaTeX_Math-Italic.ttf
./pygsti/report/templates/offline/fonts/KaTeX_Math-Italic.woff
./pygsti/report/templates/offline/fonts/KaTeX_Math-Italic.woff2
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./pygsti/report/templates/offline/fonts/KaTeX_SansSerif-Italic.eot
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./pygsti/report/templates/offline/fonts/cmunti.otf
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./pygsti/report/templates/offline/images/pyGSTi_icon.png
./pygsti/report/templates/offline/images/ui-bg_glass_55_fbf9ee_1x400.png
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./pygsti/report/templates/report_notebook/data_comparison.txt
./pygsti/report/templates/report_notebook/gauge_invariant.txt
./pygsti/report/templates/report_notebook/gauge_variant.txt
./pygsti/report/templates/report_notebook/goodness.txt
./pygsti/report/templates/report_notebook/input.txt
./pygsti/report/templates/report_notebook/meta.txt
./pygsti/report/templates/report_notebook/summary.txt
./pygsti/report/templates/standard_html_report/main.html
./pygsti/report/templates/standard_html_report/tabs/AjaxError.html
./pygsti/report/templates/standard_html_report/tabs/DataComparison.html
./pygsti/report/templates/standard_html_report/tabs/GaugeInvariants_gates.html
./pygsti/report/templates/standard_html_report/tabs/GaugeInvariants_germs.html
./pygsti/report/templates/standard_html_report/tabs/GaugeVariants.html
./pygsti/report/templates/standard_html_report/tabs/GaugeVariants_decomp.html
./pygsti/report/templates/standard_html_report/tabs/GaugeVariants_errgen.html
./pygsti/report/templates/standard_html_report/tabs/GaugeVariants_raw.html
./pygsti/report/templates/standard_html_report/tabs/Goodness.html
./pygsti/report/templates/standard_html_report/tabs/Goodness_colorboxplot.html
./pygsti/report/templates/standard_html_report/tabs/Goodness_scaling.html
./pygsti/report/templates/standard_html_report/tabs/Goodness_unmodeled.html
./pygsti/report/templates/standard_html_report/tabs/Help.html
./pygsti/report/templates/standard_html_report/tabs/IdleTomography.html
./pygsti/report/templates/standard_html_report/tabs/Input.html
./pygsti/report/templates/standard_html_report/tabs/Meta.html
./pygsti/report/templates/standard_html_report/tabs/Summary.html
./pygsti/tools/__init__.py
./pygsti/tools/basisconstructors.py
./pygsti/tools/basistools.py
./pygsti/tools/chi2fns.py
./pygsti/tools/compattools.py
./pygsti/tools/exceptions.py
./pygsti/tools/fastcalc.pyx
./pygsti/tools/group.py
./pygsti/tools/hypothesis.py
./pygsti/tools/internalgates.py
./pygsti/tools/jamiolkowski.py
./pygsti/tools/legacytools.py
./pygsti/tools/likelihoodfns.py
./pygsti/tools/lindbladtools.py
./pygsti/tools/listtools.py
./pygsti/tools/matrixmod2.py
./pygsti/tools/matrixtools.py
./pygsti/tools/mpitools.py
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