LICENSE.txt
MANIFEST.in
README.txt
setup.cfg
setup.py
doc/Makefile
doc/rest/conf.py
doc/rest/contents.rst
doc/rest/guidelist.rst
doc/rest/sequences.rst
doc/rest/team.rst
doc/rest/whatsnew.rst
doc/rest/guides/devguide.rst
doc/rest/guides/libnclist.rst
doc/rest/guides/testing.rst
doc/rest/recipes/alignment_recipes.rst
doc/rest/reference/annotation.rst
doc/rest/reference/blast.rst
doc/rest/reference/classutil.rst
doc/rest/reference/cnestedlist.rst
doc/rest/reference/coordinator.rst
doc/rest/reference/downloader.rst
doc/rest/reference/mapping.rst
doc/rest/reference/metabase.rst
doc/rest/reference/seqdb.rst
doc/rest/reference/sequence.rst
doc/rest/reference/sequtil.rst
doc/rest/reference/sqlgraph.rst
doc/rest/reference/worldbase.rst
doc/rest/static/contents.png
doc/rest/static/data-browser.png
doc/rest/static/pygr-doc.css
doc/rest/static/pygr-epydoc.css
doc/rest/static/pygr-logo.gif
doc/rest/templates/index.html
doc/rest/templates/indexsidebar.html
doc/rest/templates/layout.html
doc/rest/templates/media.html
doc/rest/tutorials/alignment.rst
doc/rest/tutorials/annotating-yeast.rst
doc/rest/tutorials/annotation.rst
doc/rest/tutorials/annotation2.rst
doc/rest/tutorials/compgenomics.rst
doc/rest/tutorials/db.rst
doc/rest/tutorials/db_basic.rst
doc/rest/tutorials/develop.rst
doc/rest/tutorials/gene.rst
doc/rest/tutorials/graphquery.rst
doc/rest/tutorials/sequence.rst
doc/rest/tutorials/slice_pickle_obj.py
doc/rest/tutorials/worldbase.rst
doc/rest/tutorials/worldbase2.rst
doc/rest/tutorials/xmlrpc.rst
misc/pygrrc.example
misc/debian/changelog
misc/debian/compat
misc/debian/control
misc/debian/copyright
misc/debian/pycompat
misc/debian/rules
misc/debian/watch
misc/fink/pygr-doc.info
misc/fink/pygr-py.info
misc/portage/pygr-9999.ebuild
misc/portage/pygr-VER.ebuild
pygr/Data.py
pygr/__init__.py
pygr/annotation.py
pygr/blast.py
pygr/cdict.c
pygr/cdict.pxd
pygr/cdict.pyx
pygr/cgraph.c
pygr/cgraph.h
pygr/classutil.py
pygr/cnestedlist.c
pygr/cnestedlist.pxd
pygr/cnestedlist.pyx
pygr/coordinator.py
pygr/dbfile.py
pygr/default.h
pygr/downloader.py
pygr/graphquery.py
pygr/intervaldb.c
pygr/intervaldb.h
pygr/logger.py
pygr/mapping.py
pygr/metabase.py
pygr/nlmsa_utils.py
pygr/parse_blast.py
pygr/schema.py
pygr/seqdb.py
pygr/seqfmt.c
pygr/seqfmt.pyx
pygr/sequence.py
pygr/sequtil.py
pygr/sqlgraph.py
pygr/translationDB.py
pygr/xnestedlist.py
pygr.egg-info/PKG-INFO
pygr.egg-info/SOURCES.txt
pygr.egg-info/dependency_links.txt
pygr.egg-info/top_level.txt
pygr/apps/__init__.py
pygr/apps/catalog_downloads.py
pygr/apps/leelabdb.py
pygr/apps/maf2VSgraph.py
pygr/apps/maf2nclist.c
pygr/apps/maf2nclist.h
pygr/apps/maf2nclist.py
pygr/apps/seqref.py
pygr/apps/splicegraph.py
tests/README.txt
tests/annotation_dm2_megatest.py
tests/annotation_hg18_megatest.py
tests/annotation_test.py
tests/blast_test.py
tests/doctests_test.py
tests/downloadNLMSA_megatest.py
tests/graph_test.py
tests/metabase_test.py
tests/nlmsa_dm2_megatest.py
tests/nlmsa_hg18_megatest.py
tests/nlmsa_test.py
tests/pairwise_hg18_megatest.py
tests/pygrdata_test.py
tests/restartIterator_megatest.py
tests/runtest.py
tests/seqdb_test.py
tests/sequence_test.py
tests/sqlsequence_test.py
tests/sqltable_test.py
tests/translationDB_test.py
tests/worldbase_test.py
tests/data/alignments.fa
tests/data/bad_tblastn.txt
tests/data/blastp_output.txt
tests/data/blastx_output.txt
tests/data/dnaseq.fasta
tests/data/exontuples.txt
tests/data/funnyseq.fasta
tests/data/gapping.fa
tests/data/hbb1_mouse.fa
tests/data/hbb1_mouse_rc.fa
tests/data/multiblast_long_correct.txt
tests/data/multiblast_long_output.txt
tests/data/multiblast_output.txt
tests/data/partial-yeast.fasta
tests/data/prefixUnionDict-1.txt
tests/data/prefixUnionDict-2.txt
tests/data/prefixUnionDict-3.txt
tests/data/sp_all_hbb
tests/data/sp_hbb1
tests/data/tblastn_output.txt
tests/data/test.gz
tests/data/test.zip
tests/testlib/__init__.py
tests/testlib/megatest_utils.py
tests/testlib/pathfix.py
tests/testlib/pygrdata_server.py
tests/testlib/testoptions.py
tests/testlib/testutil.py
tests/testlib/unittest_extensions.py
tests/tools/run_megatests
tests/tools/send_megatest_email.py