MANIFEST.in
README.md
setup.py
pygen_structures/__init__.py
pygen_structures/__main__.py
pygen_structures/_functions_const.py
pygen_structures/_typing.py
pygen_structures/charmm_containers.py
pygen_structures/convenience_functions.py
pygen_structures/version.py
pygen_structures.egg-info/PKG-INFO
pygen_structures.egg-info/SOURCES.txt
pygen_structures.egg-info/dependency_links.txt
pygen_structures.egg-info/entry_points.txt
pygen_structures.egg-info/requires.txt
pygen_structures.egg-info/top_level.txt
pygen_structures/mol_containers/__init__.py
pygen_structures/mol_containers/atom.py
pygen_structures/mol_containers/molecule.py
pygen_structures/mol_containers/structure.py
pygen_structures/test/.coverage
pygen_structures/test/__init__.py
pygen_structures/test/charmm_dir.pkl
pygen_structures/test/test_charmm_containers.py
pygen_structures/test/test_command_line.py
pygen_structures/test/test_convenience_functions.py
pygen_structures/test/test_mol_containers.py
pygen_structures/test/test_openmm.py
pygen_structures/test/test_toppar/par_all36_prot.prm
pygen_structures/test/test_toppar/top_all36_prot.rtf
pygen_structures/test/test_toppar/toppar_all36_prot_c36_d_aminoacids.str
pygen_structures/toppar/00changes_2018_to_2019.txt
pygen_structures/toppar/00git_information.txt
pygen_structures/toppar/00toppar_file_format.txt
pygen_structures/toppar/README.md
pygen_structures/toppar/par_all35_ethers.prm
pygen_structures/toppar/par_all36_carb.prm
pygen_structures/toppar/par_all36_cgenff.prm
pygen_structures/toppar/par_all36_lipid.prm
pygen_structures/toppar/par_all36_na.prm
pygen_structures/toppar/par_all36_prot.prm
pygen_structures/toppar/par_all36m_prot.prm
pygen_structures/toppar/top_all35_ethers.rtf
pygen_structures/toppar/top_all36_carb.rtf
pygen_structures/toppar/top_all36_cgenff.rtf
pygen_structures/toppar/top_all36_lipid.rtf
pygen_structures/toppar/top_all36_na.rtf
pygen_structures/toppar/top_all36_prot.rtf
pygen_structures/toppar/toppar_all.history
pygen_structures/toppar/toppar_water_ions.str
pygen_structures/toppar/stream/carb/toppar_all36_carb_glycolipid.str
pygen_structures/toppar/stream/carb/toppar_all36_carb_glycopeptide.str
pygen_structures/toppar/stream/carb/toppar_all36_carb_imlab.str
pygen_structures/toppar/stream/carb/toppar_all36_carb_lignin.str
pygen_structures/toppar/stream/carb/toppar_all36_carb_model.str
pygen_structures/toppar/stream/cphmd/protpatch_protein_toppar36.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_bacterial.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_cardiolipin.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_cationpi_wyf.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_cholesterol.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_detergent.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_ether.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_inositol.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_list.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_lps.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_miscellaneous.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_model.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_prot.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_sphingo.str
pygen_structures/toppar/stream/lipid/toppar_all36_lipid_yeast.str
pygen_structures/toppar/stream/misc/toppar_amines.str
pygen_structures/toppar/stream/misc/toppar_dum_noble_gases.str
pygen_structures/toppar/stream/misc/toppar_hbond.str
pygen_structures/toppar/stream/misc/toppar_ions_won.str
pygen_structures/toppar/stream/na/toppar_all36_na_model.str
pygen_structures/toppar/stream/na/toppar_all36_na_modifications.str
pygen_structures/toppar/stream/na/toppar_all36_na_nad_ppi.str
pygen_structures/toppar/stream/na/toppar_all36_na_reactive_rna.str
pygen_structures/toppar/stream/na/toppar_all36_na_rna_modified.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_aldehydes.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_arg0.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_c36_d_aminoacids.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_c36m_d_aminoacids.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_fluoro_alkanes.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_heme.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_model.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_modify_res.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_na_combined.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_pyridines.str
pygen_structures/toppar/stream/prot/toppar_all36_prot_retinol.str