Metadata-Version: 2.1
Name: pyecotaxa
Version: 0.0.4
Summary: Query EcoTaxa and process its output
Home-page: https://github.com/ecotaxa/pyecotaxa
Author: Simon-Martin Schroeder
Author-email: sms@informatik.uni-kiel.de
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pandas
Requires-Dist: numpy
Requires-Dist: python-dotenv
Requires-Dist: requests
Requires-Dist: tqdm
Requires-Dist: werkzeug
Requires-Dist: semantic-version
Requires-Dist: atomicwrites
Provides-Extra: dev
Requires-Dist: black ; extra == 'dev'
Provides-Extra: docs
Requires-Dist: sphinx (>=1.4) ; extra == 'docs'
Requires-Dist: sphinx-rtd-theme ; extra == 'docs'
Requires-Dist: sphinx-autodoc-typehints (>=1.10.0) ; extra == 'docs'
Provides-Extra: test
Requires-Dist: pytest ; extra == 'test'
Requires-Dist: pytest-cov ; extra == 'test'
Requires-Dist: flake8 ; extra == 'test'

# pyecotaxa

[![Documentation Status](https://readthedocs.org/projects/pyecotaxa/badge/?version=stable)](https://pyecotaxa.readthedocs.io/en/stable/?badge=stable)
[![Tests](https://github.com/ecotaxa/pyecotaxa/workflows/Tests/badge.svg)](https://github.com/ecotaxa/pyecotaxa/actions?query=workflow%3ATests)
[![PyPI](https://img.shields.io/pypi/v/pyecotaxa)](https://pypi.org/project/pyecotaxa)

Python package to query EcoTaxa and process its output.

## `pyecotaxa.archive`: Read and write EcoTaxa archives

```python
from pyecotaxa.archive import read_tsv, write_tsv

# Read a .tsv file into a pandas DataFrame
# In contrast to pd.read_csv, this function transparently handles the type header
df = read_tsv(path_to_file)

# Write pandas DataFrame into a .tsv file
# In contrast to df.to_csv, this function can generate the type header
write_tsv(df, path_to_file)
```


## `pyecotaxa.remote`: Interact with a remote EcoTaxa server

```python
from pyecotaxa.remote import Remote

r = Remote()

# Login
r.login(username, password)

# Pull one or more project archives by project_id
r.pull(project_ids)
```
