LICENSE.txt
MANIFEST.in
README.md
gpl.txt
run_test.py
setup.cfg
setup.py
versioneer.py
docs/BUILD_HTML.sh
docs/BUILD_RST_FILES.sh
docs/CHANGELOG.md
docs/cheat_sheet.odt
docs/cheat_sheet.pdf
docs/conf.py
docs/docs.zip
docs/hej.zip
docs/index.rst
docs/modules.rst
docs/pydna.rst
docs/rtdenv.yml
docs/_static/ajax-loader.gif
docs/_static/basic.css
docs/_static/comment-bright.png
docs/_static/comment-close.png
docs/_static/comment.png
docs/_static/default.css
docs/_static/doctools.js
docs/_static/down-pressed.png
docs/_static/down.png
docs/_static/favicon.ico
docs/_static/file.png
docs/_static/jquery.js
docs/_static/minus.png
docs/_static/plus.png
docs/_static/pygments.css
docs/_static/searchtools.js
docs/_static/sidebar.js
docs/_static/underscore.js
docs/_static/up-pressed.png
docs/_static/up.png
docs/_static/websupport.js
docs/docs regarding PCR programs for enzymes with sso7 domains/Finnzymes Reagents - Optimizing Tm and annealing.pdf
docs/docs regarding PCR programs for enzymes with sso7 domains/Optimizing Tm and Annealing _ Thermo Fisher Scientific.pdf
docs/docs regarding PCR programs for enzymes with sso7 domains/PCR Protocol for Phusion High-Fidelity DNA Polymerase (M0530) _ NEB.pdf
docs/pics/BMC.png
docs/pics/BMC_resized.png
docs/pics/BMC_resized_old.png
docs/pics/gel.png
docs/pics/pydna (copy).png
docs/pics/pydna.png
docs/pics/pydna.resized.png
pydna/__init__.py
pydna/_pretty.py
pydna/_sequencetrace.py
pydna/_simple_paths8.py
pydna/_thermodynamic_data.py
pydna/_version.py
pydna/all.py
pydna/amplicon.py
pydna/amplify.py
pydna/assembly.py
pydna/common_sub_strings.py
pydna/contig.py
pydna/design.py
pydna/download.py
pydna/dseq.py
pydna/dseqrecord.py
pydna/editor.py
pydna/gel.py
pydna/genbank.py
pydna/genbankfile.py
pydna/genbankfixer.py
pydna/genbankrecord.py
pydna/ipynb_importer.py
pydna/myprimers.py
pydna/parsers.py
pydna/primer.py
pydna/readers.py
pydna/seqrecord.py
pydna/tm.py
pydna/utils.py
pydna.egg-info/PKG-INFO
pydna.egg-info/SOURCES.txt
pydna.egg-info/dependency_links.txt
pydna.egg-info/not-zip-safe
pydna.egg-info/requires.txt
pydna.egg-info/top_level.txt
pydna/_py_rstr_max/__init__.py
pydna/_py_rstr_max/rstr_max.py
pydna/_py_rstr_max/tools_karkkainen_sanders.py
tests/02-G1_B01_013.ab1
tests/28-1rev_D04_026.ab1
tests/32-3rev_H04_018.ab1
tests/36-5rev_D05_041.ab1
tests/AJ515744.gb
tests/AJ515746.gb
tests/AJ580803.gb
tests/AJ580804.gb
tests/AM086621.gb
tests/AX023560.gb
tests/E05006.gb
tests/GIN11M86.gb
tests/GUP1_locus.gb
tests/GUP1rec1sens.txt
tests/GUP1rec2AS.txt
tests/KlLEU2tt.fas
tests/KlLEU2tt.gb
tests/PUC19_MarkBudde.gb
tests/RefDataBjorn.fas
tests/SYNPUC19CV.gb
tests/TESTTEST
tests/TESTTEST.py
tests/XKS1_orf.txt
tests/YEp24PGK.txt
tests/YEp24PGK_.txt
tests/YEp24PGK_XK_manually_assembled.txt
tests/format_sequences.ipynb
tests/jupyter_test_repr.ipynb
tests/lambda.gb
tests/mymodule.py
tests/mynotebook.ipynb
tests/pAG25.gb
tests/pAG32.gb
tests/pCAPs-AjiI.gb
tests/pCAPs-pSU0.gb
tests/pCAPs.gb
tests/pCAPs_fasta (copy).txt
tests/pCAPs_fasta.txt
tests/pCAPs_lowgc.gb
tests/pCR_MCT1_HA46.gb
tests/pGREG505.gb
tests/pGSHU 7180bp.gb
tests/pGSKU 6961bp.gb
tests/pGUP1_correct.gb
tests/pGUP1_not_synced.gb
tests/pMX4blaster2_old.gb
tests/pUC19-BamHI-a-rc.gb
tests/pUC19-BamHI-a.gb
tests/pUC19-EcoRI_PstI-d-rc.gb
tests/pUC19-SmaI-a.gb
tests/pUC19.gb
tests/pUC19_fasta.txt
tests/pUC19_small_gene.gb
tests/pUC_LAC4.gb
tests/pUC_LAC4_correct_rotation.gb
tests/primer1.txt
tests/primer3.txt
tests/primers.fas
tests/pth1.txt
tests/pth2.txt
tests/pthx.txt
tests/pydna_read_test.txt
tests/pydna_read_test2.txt
tests/pydna_read_test3.txt
tests/pytestifier.py
tests/read1.gb
tests/read2.gb
tests/read3.fasta
tests/read4.fasta
tests/save_changed_seq.ipynb
tests/sequence.gb
tests/test
tests/test_amplify.py
tests/test_assemble_MX4blaster12.py
tests/test_assemble_YEp24PGK_XK.py
tests/test_assemble_pGUP1.py
tests/test_assembly.py
tests/test_cut_features.py
tests/test_download_genbank.py
tests/test_download_web.py
tests/test_dsdna.py
tests/test_dseq.py
tests/test_genbankfixer.py
tests/test_import_ipynb.py
tests/test_map_reads.py
tests/test_markbudde.py
tests/test_parse.py
tests/test_pretty.py
tests/test_primer_design.py
tests/test_primer_design2.py
tests/test_read.py
tests/test_santirdnd_bug_spanning_features.py
tests/test_utils.py
tests/testkernel
tests/.ipynb_checkpoints/format_sequences-checkpoint.ipynb
tests/.ipynb_checkpoints/jupyter_test_repr-checkpoint.ipynb
tests/.ipynb_checkpoints/mynotebook-checkpoint.ipynb
tests/.ipynb_checkpoints/save_changed_seq-checkpoint.ipynb
tests/broken_genbank_files/ApE_example.gb
tests/broken_genbank_files/Author sequence.gb
tests/broken_genbank_files/NCBI_example.gb
tests/broken_genbank_files/P30350%20(2013-10-11%2013_49_14).dna.txt
tests/broken_genbank_files/VectorNTI_example.gb
tests/broken_genbank_files/YEplac181.txt
tests/broken_genbank_files/hej.txt
tests/broken_genbank_files/pGADT7-Rec.gb
tests/broken_genbank_files/pGreenLantern1.gb
tests/broken_genbank_files/sequence.gb
tests/subfolder/sequence.gb