setup.cfg
setup.py
pydigree/__init__.py
pydigree/common.py
pydigree/exceptions.py
pydigree/ibs.py
pydigree/individual.py
pydigree/individualcontainer.py
pydigree/paths.py
pydigree/pedigree.py
pydigree/pedigreecollection.py
pydigree/population.py
pydigree/rand.py
pydigree/recombination.py
pydigree/support.py
pydigree.egg-info/PKG-INFO
pydigree.egg-info/SOURCES.txt
pydigree.egg-info/dependency_links.txt
pydigree.egg-info/top_level.txt
pydigree/cydigree/__init__.py
pydigree/cydigree/cyfuncs.c
pydigree/cydigree/datastructures.c
pydigree/cydigree/varianttree.c
pydigree/cydigree/vcfparse.c
pydigree/datastructures/__init__.py
pydigree/genotypes/__init__.py
pydigree/genotypes/alleles.py
pydigree/genotypes/chromosometemplate.py
pydigree/genotypes/genoabc.py
pydigree/genotypes/labelledalleles.py
pydigree/genotypes/sparsealleles.py
pydigree/io/__init__.py
pydigree/io/base.py
pydigree/io/beagle.py
pydigree/io/genomesimla.py
pydigree/io/kinship.py
pydigree/io/merlin.py
pydigree/io/plink.py
pydigree/io/sgs.py
pydigree/io/smartopen.py
pydigree/io/vcf.py
pydigree/sgs/__init__.py
pydigree/sgs/sgs.py
pydigree/simulation/__init__.py
pydigree/simulation/chromosomepool.py
pydigree/simulation/constrained_mendelian.py
pydigree/simulation/naivegenedrop.py
pydigree/simulation/simulation.py
pydigree/simulation/trait.py
pydigree/stats/__init__.py
pydigree/stats/mathfuncs.py
pydigree/stats/stattests.py
pydigree/stats/variancecomponents.py
pydigree/stats/mixedmodel/__init__.py
pydigree/stats/mixedmodel/likelihood.py
pydigree/stats/mixedmodel/maximization.py
pydigree/stats/mixedmodel/mixedmodel.py
pydigree/stats/mixedmodel/mixin.py