.bumpversion.cfg
.coveragerc
.editorconfig
.travis.yml
ACKNOWLEDGEMENTS.rst
AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
tox.ini
ci/bootstrap.py
ci/templates/.travis.yml
docs/Makefile
docs/acknowledgements.rst
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/installation.rst
docs/readme.rst
docs/requirements.txt
docs/spelling_wordlist.txt
docs/theory.rst
docs/usage.rst
docs/jupyter notebook tutorials/index.rst
docs/jupyter notebook tutorials/Four_Wells/Four_Wells.rst
docs/jupyter notebook tutorials/Four_Wells/output_11_0.png
docs/jupyter notebook tutorials/Four_Wells/output_15_0.png
docs/jupyter notebook tutorials/Four_Wells/output_18_0.png
docs/jupyter notebook tutorials/Four_Wells/output_21_0.png
docs/jupyter notebook tutorials/Four_Wells/output_26_0.png
docs/jupyter notebook tutorials/Four_Wells/output_4_0.png
docs/jupyter notebook tutorials/Four_Wells/output_8_0.png
docs/jupyter notebook tutorials/Metrics/Metrics.rst
docs/jupyter notebook tutorials/Metrics/output_10_0.png
docs/jupyter notebook tutorials/Metrics/output_14_0.png
docs/jupyter notebook tutorials/Metrics/output_19_0.png
docs/jupyter notebook tutorials/Metrics/output_6_0.png
docs/jupyter notebook tutorials/Spherical_Harmonics/Spherical_Harmonics.rst
docs/jupyter notebook tutorials/Spherical_Harmonics/output_10_0.png
docs/jupyter notebook tutorials/Spherical_Harmonics/output_15_1.png
docs/jupyter notebook tutorials/Spherical_Harmonics/output_9_0.png
docs/jupyter notebook tutorials/Swiss_Roll/Swiss_Roll.rst
docs/jupyter notebook tutorials/Swiss_Roll/output_10_0.png
docs/jupyter notebook tutorials/Swiss_Roll/output_10_1.png
docs/jupyter notebook tutorials/Swiss_Roll/output_12_1.png
docs/jupyter notebook tutorials/Swiss_Roll/output_8_0.png
docs/jupyter notebook tutorials/Swiss_Roll/output_8_1.png
docs/reference/diffusion_map.rst
docs/reference/index.rst
docs/reference/kernel.rst
docs/reference/visualization.rst
examples/Four_Wells.ipynb
examples/Metrics.ipynb
examples/Spherical_Harmonics.ipynb
examples/Swiss_Roll.ipynb
examples/Data/4wells_traj.npy
examples/Data/dimer_energy.npy
examples/Data/dimer_trajectory.npy
src/pydiffmap/__init__.py
src/pydiffmap/diffusion_map.py
src/pydiffmap/kernel.py
src/pydiffmap/visualization.py
src/pydiffmap.egg-info/PKG-INFO
src/pydiffmap.egg-info/SOURCES.txt
src/pydiffmap.egg-info/dependency_links.txt
src/pydiffmap.egg-info/not-zip-safe
src/pydiffmap.egg-info/requires.txt
src/pydiffmap.egg-info/top_level.txt
tests/conftest.py
tests/test_diffusionmap.py
tests/test_kernel.py
tests/test_visualization.py