Containerfile
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/pycov3/App.py
src/pycov3/Directory.py
src/pycov3/File.py
src/pycov3/Sequence.py
src/pycov3/__init__.py
src/pycov3/cli.py
src/pycov3.egg-info/PKG-INFO
src/pycov3.egg-info/SOURCES.txt
src/pycov3.egg-info/dependency_links.txt
src/pycov3.egg-info/entry_points.txt
src/pycov3.egg-info/requires.txt
src/pycov3.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/data/sim/README.md
tests/data/sim/expected_output/max_bin.001.cov3
tests/data/sim/fastas/max_bin.001.fasta
tests/data/sim/fastas/max_bin.002.fasta
tests/data/sim/sams/Akk_001.sam
tests/data/sim/sams/Akk_002.sam
tests/data/sim/sams/Bfrag_001.sam
tests/data/sim/sams/Bfrag_002.sam
tests/e2e/test_sim_data.py
tests/unit/test_Contig.py
tests/unit/test_Cov3Dir.py
tests/unit/test_Cov3File.py
tests/unit/test_Cov3Generator.py
tests/unit/test_FastaDir.py
tests/unit/test_FastaFile.py
tests/unit/test_SamDir.py
tests/unit/test_SamFile.py
tests/unit/test_Window.py
tests/unit/utils.py