MANIFEST.in
README.md
setup.py
pycofitness/__init__.py
pycofitness/main.py
pycofitness.egg-info/PKG-INFO
pycofitness.egg-info/SOURCES.txt
pycofitness.egg-info/dependency_links.txt
pycofitness.egg-info/entry_points.txt
pycofitness.egg-info/requires.txt
pycofitness.egg-info/top_level.txt
pycofitness/fasta_reader/__init__.py
pycofitness/fasta_reader/fasta_reader.py
pycofitness/logging_config/__init__.py
pycofitness/logging_config/logging_config.py
pycofitness/msa_trimmer/__init__.py
pycofitness/msa_trimmer/msa_trimmer.py
pycofitness/mutation/__init__.py
pycofitness/mutation/mutation.py
pycofitness/plmdca/__init__.py
pycofitness/plmdca/plmdca.py
pycofitness/plmdca/plmdcaBackend.cpp
pycofitness/plmdca/plmdca_numerics.cpp
pycofitness/plmdca/include/plmdca.h
pycofitness/plmdca/lbfgs/include/arithmetic_ansi.h
pycofitness/plmdca/lbfgs/include/arithmetic_sse_double.h
pycofitness/plmdca/lbfgs/include/arithmetic_sse_float.h
pycofitness/plmdca/lbfgs/include/lbfgs.h
pycofitness/plmdca/lbfgs/lib/lbfgs.cpp
pycofitness/resmapping/__init__.py
pycofitness/resmapping/resmapping.py