.gitignore
.pylintrc
LICENSE
README.md
requirements.txt
setup.py
docs/conf.py
docs/documentation.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/makefile
docs/modules.rst
docs/pyckmeans.core.rst
docs/pyckmeans.distance.rst
docs/pyckmeans.io.rst
docs/pyckmeans.knee.rst
docs/pyckmeans.ordering.rst
docs/pyckmeans.pcoa.rst
docs/pyckmeans.rst
docs/pyckmeans.utils.rst
docs/requirements.txt
pyckmeans/__init__.py
pyckmeans.egg-info/PKG-INFO
pyckmeans.egg-info/SOURCES.txt
pyckmeans.egg-info/dependency_links.txt
pyckmeans.egg-info/requires.txt
pyckmeans.egg-info/top_level.txt
pyckmeans/distance/src/distance.cpp
pyckmeans/io/src/nucencode.cpp
pyckmeans/core/__init__.py
pyckmeans/core/ckmeans.py
pyckmeans/core/multickmeans.py
pyckmeans/core/wecr.py
pyckmeans/core/tests/test_core.py
pyckmeans/distance/__init__.py
pyckmeans/distance/c_interop.py
pyckmeans/distance/src/distance.cpp
pyckmeans/distance/tests/test_c_interop.py
pyckmeans/distance/tests/test_distance.py
pyckmeans/io/__init__.py
pyckmeans/io/c_interop.py
pyckmeans/io/csv.py
pyckmeans/io/fasta.py
pyckmeans/io/nucleotide_alignment.py
pyckmeans/io/phylip.py
pyckmeans/io/tests/test_csv.py
pyckmeans/io/tests/test_fasta.py
pyckmeans/io/tests/test_nucleotidealignment.py
pyckmeans/io/tests/test_phylip.py
pyckmeans/knee/__init__.py
pyckmeans/ordering/__init__.py
pyckmeans/ordering/tests/test_reordering.py
pyckmeans/ordination/__init__.py
pyckmeans/tests/manual_test.py
pyckmeans/tests/manual_test_2.py
pyckmeans/tests/test_workflow.py
pyckmeans/utils/__init__.py
pyckmeans/utils/plotting.py
pyckmeans/utils/progressbar.py