CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
settings.ini
setup.py
pybiotools4p/__init__.py
pybiotools4p/_nbdev.py
pybiotools4p/cmdl.py
pybiotools4p/utils.py
pybiotools4p.egg-info/PKG-INFO
pybiotools4p.egg-info/SOURCES.txt
pybiotools4p.egg-info/dependency_links.txt
pybiotools4p.egg-info/entry_points.txt
pybiotools4p.egg-info/not-zip-safe
pybiotools4p.egg-info/requires.txt
pybiotools4p.egg-info/top_level.txt
pybiotools4p/cmdutils/__init__.py
pybiotools4p/cmdutils/cmdgffcompare.py
pybiotools4p/cmdutils/cmdkallisto.py
pybiotools4p/softwares/__init__.py
pybiotools4p/softwares/base.py
pybiotools4p/softwares/bam/__init__.py
pybiotools4p/softwares/bam/featurecounts.py
pybiotools4p/softwares/bam/nanopolish.py
pybiotools4p/softwares/bam/picard.py
pybiotools4p/softwares/bam/samtools.py
pybiotools4p/softwares/bam/stringtie.py
pybiotools4p/softwares/fasta/__init__.py
pybiotools4p/softwares/fasta/gffread.py
pybiotools4p/softwares/fasta/rnasamba.py
pybiotools4p/softwares/fastq/__init__.py
pybiotools4p/softwares/fastq/fastp.py
pybiotools4p/softwares/fastq/fastqc.py
pybiotools4p/softwares/fastq/hisat2.py
pybiotools4p/softwares/fastq/kallisto.py
pybiotools4p/softwares/fastq/minimap2.py
pybiotools4p/softwares/fastq/star.py
pybiotools4p/softwares/gtf/__init__.py
pybiotools4p/softwares/gtf/gffcompare.py
pybiotools4p/softwares/inhouse/__init__.py
pybiotools4p/softwares/inhouse/bitk.py
pybiotools4p/softwares/inhouse/r.py
pybiotools4p/softwares/tsv/__init__.py
pybiotools4p/softwares/tsv/nanopolishcomp.py