from pybioinformatic.bed import Bed
from pybioinformatic.blast import Blast
from pybioinformatic.decompressing_file import ungz
from pybioinformatic.fasta import Fasta
from pybioinformatic.genotype import GenoType
from pybioinformatic.gff import Gff
from pybioinformatic.gtf import Gtf
from pybioinformatic.sequence import Sequence, Nucleotide, Protein
from pybioinformatic.show_info import Displayer
from pybioinformatic.timer import Timer
from pybioinformatic.task_manager import TaskManager
from pybioinformatic.vcf import VCF
from pybioinformatic.util import FuncDict
from pybioinformatic.biomatplotlib import generate_unique_colors
from pybioinformatic.biopandas import (
    display_set,
    read_file_as_dataframe_from_stdin,
    read_in_gene_expression_as_dataframe,
    merge_duplicate_indexes,
    filter_by_min_value,
    get_FPKM,
    get_TPM,
    dfs_to_excel,
    dataframe_to_str,
    interval_stat
)

__version__ = '0.0.2'
__all__ = [
    'Bed',
    'Blast',
    'ungz',
    'Fasta',
    'GenoType',
    'Gff',
    'Gtf',
    'Sequence',
    'Nucleotide',
    'Protein',
    'Displayer',
    'Timer',
    'TaskManager',
    'VCF',
    'FuncDict',
    'display_set',
    'read_file_as_dataframe_from_stdin',
    'read_in_gene_expression_as_dataframe',
    'merge_duplicate_indexes',
    'filter_by_min_value',
    'get_TPM',
    'get_FPKM',
    'dfs_to_excel',
    'dataframe_to_str',
    'interval_stat',
    'generate_unique_colors'
]
