cff-version: 1.2.0
title: pybioclip
message: If you use this software, please cite both the conference paper from references section and the software itself.
type: software
authors:
  - given-names: John
    family-names: Bradley
  - given-names: Hilmar
    family-names: Lapp
  - family-names: Campolongo
    given-names: "Elizabeth G."
identifiers:
  - type: doi
    value: 10.5281/zenodo.13151194
  - description: "The GitHub release URL of tag 1.3.2."
    type: url
    value: "https://github.com/Imageomics/pybioclip/releases/tag/1.3.2"
  - description: "The GitHub URL of the commit tagged with 1.3.0."
    type: url
    value: "https://github.com/Imageomics/pybioclip/tree/66eb15e308bc88d17d5af8e8fa0180f6b2519cf1"
repository-code: 'https://github.com/Imageomics/pybioclip'
url: 'https://github.com/Imageomics/pybioclip'
abstract: Python package and command line tool that simplifies using the BioCLIP foundation model.
keywords:
  - clip
  - biology
  - CV
  - imageomics
  - animals
  - species
  - images
  - taxonomy
  - "rare species"
  - "endangered species"
  - "evolutionary biology"
  - multimodal
  - "knowledge-guided"
  - python
  - "command line"
  - bioclip
  - plants
  - fungi
  - genus
  - "image classification"
license: MIT
version: 1.3.2
date-released: '2025-03-13'
references:
- type: conference-paper
  title: "BioCLIP: A Vision Foundation Model for the Tree of Life"
  authors:
    - family-names: Stevens
      given-names: Samuel
    - family-names: Wu
      given-names: Jiaman
    - family-names: Thompson
      given-names: "Matthew J."
    - family-names: Campolongo
      given-names: "Elizabeth G."
    - family-names: Song
      given-names: "Chan Hee"
    - family-names: Carlyn
      given-names: "David Edward"
    - family-names: Dong
      given-names: Li
    - family-names: Dahdul
      given-names: "Wasila M"
    - family-names: Stewart
      given-names: Charles
    - family-names: "Berger-Wolf"
      given-names: Tanya
    - family-names: Chao
      given-names: "Wei-Lun"
    - family-names: Su
      given-names: Yu
  version: 1.0.0
  doi: "10.5281/zenodo.10895871"
  date-released: "2024-03-29"
