Metadata-Version: 2.0
Name: pyard
Version: 0.0.10
Summary: ARD reduction for HLA with python
Home-page: https://github.com/nmdp-bioinformatics/pyARD
Author: Michael Halagan
Author-email: mhalagan@nmdp.org
License: LGPL 3.0
Keywords: pyard
Platform: UNKNOWN
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.6
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Dist: certifi (==2018.1.18)
Requires-Dist: chardet (==3.0.4)
Requires-Dist: idna (==2.6)
Requires-Dist: mypy (==0.560)
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: pkginfo (==1.4.1)
Requires-Dist: psutil (==5.4.3)
Requires-Dist: python-dateutil (==2.6.1)
Requires-Dist: pytz (==2018.3)
Requires-Dist: requests (==2.18.4)
Requires-Dist: requests-toolbelt (==0.8.0)
Requires-Dist: six (==1.11.0)
Requires-Dist: tqdm (==4.19.5)
Requires-Dist: typed-ast (==1.1.0)
Requires-Dist: typing (==3.6.4)
Requires-Dist: urllib3 (==1.22)
Requires-Dist: xlrd (==1.1.0)

===============================
pyARD
===============================


.. image:: https://img.shields.io/pypi/v/pyars.svg
        :target: https://pypi.python.org/pypi/pyars

.. image:: https://readthedocs.org/projects/pyars/badge/?version=latest
        :target: https://pyars.readthedocs.io/en/latest/?badge=latest
        :alt: Documentation Status


ARD reduction for HLA with python

* Free software: LGPL 3.0
* Documentation: https://pyard.readthedocs.io.


Install
-------

.. code-block::

	# from source
	python3 -m venv venv
	source venv/bin/activate
	pip install -r requirements.txt
	python setup.py install

	# from PyPi
	pip install pyard


Example
-------

.. code-block:: python3

	from pyard import ARD

	# Initialize ARD object
	ard = ARD('3290')

	# Initialize with latest DB
	ard = ARD()

	allele = "A*01:01:01"

	ard.redux(allele, 'G')
	# >> 'A*01:01:01G'

	ard.redux(allele, 'lg')
	# >> 'A*01:01g'

	ard.redux(allele, 'lgx')
	# 'A*01:01'

	ard_gl = ard.redux_gl("A*01:01/A*01:01N+A*02:AB^B*07:02+B*07:AB", "G")
	# >>> ard_gl
	# 'B*07:02:01G+B*07:02:01G^A*01:01:01G+A*02:01:01G/A*02:02'


Credits
---------

This package was created with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage



=======
History
=======

0.0.1 (2018-02-12)
------------------

* First release on PyPI.


