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AFQ/tractography/__init__.py
AFQ/tractography/gputractography.py
AFQ/tractography/tractography.py
AFQ/tractography/utils.py
AFQ/utils/__init__.py
AFQ/utils/bin.py
AFQ/utils/conversion.py
AFQ/utils/docs.py
AFQ/utils/models.py
AFQ/utils/path.py
AFQ/utils/stats.py
AFQ/utils/streamlines.py
AFQ/utils/testing.py
AFQ/utils/volume.py
AFQ/utils/tests/__init__.py
AFQ/utils/tests/test_conversions.py
AFQ/utils/tests/test_path.py
AFQ/utils/tests/test_stats.py
AFQ/utils/tests/test_streamlines.py
AFQ/utils/tests/test_volume.py
AFQ/viz/__init__.py
AFQ/viz/altair.py
AFQ/viz/fury_backend.py
AFQ/viz/plot.py
AFQ/viz/plotly_backend.py
AFQ/viz/utils.py
bin/pyAFQ
docs/Makefile
docs/upload-gh-pages.sh
docs/source/_progressbars.py
docs/source/conf.py
docs/source/index.rst
docs/source/_static/BDE_Banner_revised20160211-01.jpg
docs/source/_static/custom.css
docs/source/_static/eScience_Logo_HR.png
docs/source/_static/escience-logo.png
docs/source/_static/logo.png
docs/source/_templates/layout.html
docs/source/explanations/bundle_orientation.rst
docs/source/explanations/index.rst
docs/source/explanations/modeling.rst
docs/source/explanations/profiling.rst
docs/source/explanations/recognition.rst
docs/source/explanations/tractography.rst
docs/source/explanations/tractometry_pipeline.rst
docs/source/explanations/_static/down_left_arrow.png
docs/source/explanations/_static/down_right_arrow.png
docs/source/explanations/_static/greencheck.png
docs/source/explanations/_static/tract_modeling2.png
docs/source/explanations/_static/tract_profiling.png
docs/source/explanations/_static/tract_recognition.png
docs/source/explanations/_static/tract_tractography.png
docs/source/howto/cite.rst
docs/source/howto/contributing.rst
docs/source/howto/getting_help.rst
docs/source/howto/index.rst
docs/source/howto/installation_guide.rst
docs/source/howto/developing/definitions.rst
docs/source/howto/developing/index.rst
docs/source/howto/developing/releasing.rst
docs/source/howto/developing/tasks.rst
docs/source/howto/usage/converter.rst
docs/source/howto/usage/data.rst
docs/source/howto/usage/docker.rst
docs/source/howto/usage/image.rst
docs/source/howto/usage/index.rst
docs/source/howto/usage/kwargs.rst
docs/source/howto/usage/methods.rst
docs/source/howto/usage/scalars.rst
docs/source/reference/bundledict.rst
docs/source/reference/index.rst
docs/source/reference/kwargs.rst
docs/source/reference/mapping.rst
docs/source/reference/methods.rst
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docs/source/sphinxext/kwargsdocs.py
docs/source/sphinxext/methodsdocs.py
docs/source/sphinxext/updatedocs.py
docs/source/tutorials/index.rst
examples/howto_examples/README.rst
examples/howto_examples/add_custom_bundle.py
examples/howto_examples/baby_afq.py
examples/howto_examples/cerebellar_peduncles.py
examples/howto_examples/cloudknot_example.py
examples/howto_examples/cloudknot_hcp_example.py
examples/howto_examples/plot_acoustic_radiations.py
examples/howto_examples/plot_afq_callosal.py
examples/howto_examples/plot_afq_fwdti.py
examples/howto_examples/plot_optic_radiations.py
examples/howto_examples/plot_recobundles.py
examples/howto_examples/plot_stages_of_tractometry.py
examples/howto_examples/use_subject_space_rois_from_freesurfer.py
examples/howto_examples/vof_example.py
examples/tutorial_examples/README.rst
examples/tutorial_examples/plot_001_afq_api.py
examples/tutorial_examples/plot_002_bids_layout.py
examples/tutorial_examples/plot_003_viz.py
gpu_docker/Dockerfile
gpu_docker/cuda_build.sh
gpu_docker/cuda_track_template.def
gpu_docker/docker-build.sh
gpu_docker/docker-push.sh
pyAFQ.egg-info/PKG-INFO
pyAFQ.egg-info/SOURCES.txt
pyAFQ.egg-info/dependency_links.txt
pyAFQ.egg-info/not-zip-safe
pyAFQ.egg-info/requires.txt
pyAFQ.egg-info/top_level.txt
pyafq_docker/Dockerfile
pyafq_docker/docker-build.sh
pyafq_docker/docker-push.sh