Metadata-Version: 2.1
Name: pyAFQ
Version: 1.0
Summary: pyAFQ: Automated Fiber Quantification ... in Python
Home-page: https://yeatmanlab.github.io/pyAFQ
Download-URL: https://github.com/yeatmanlab/pyAFQ
Author: pyAFQ developers
Author-email: arokem@gmail.com
Maintainer: Ariel Rokem
Maintainer-email: arokem@gmail.com
License: BSD License
Platform: OS Independent
Classifier: Development Status :: 3 - Alpha
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: scikit-image (>=0.14.2)
Requires-Dist: dipy (<1.6.0,>=1.5.0)
Requires-Dist: pandas
Requires-Dist: pybids (>=0.15.0)
Requires-Dist: templateflow (>=0.8)
Requires-Dist: pimms
Requires-Dist: joblib (>=0.16.0)
Requires-Dist: dask (>=1.1)
Requires-Dist: boto3 (>=1.14.0)
Requires-Dist: s3fs (~=0.4.2)
Requires-Dist: toml (>=0.10.0)
Requires-Dist: setuptools-scm[toml] (<5.1.0,>=3.4.0)
Requires-Dist: funcargparse (>=0.2.0)
Requires-Dist: popylar (==0.2.*)
Requires-Dist: plotly (==5.3.0)
Requires-Dist: kaleido (==0.2.1)
Requires-Dist: imageio (>=2.0.0)
Requires-Dist: Pillow
Requires-Dist: numpy (==1.23.5)
Provides-Extra: afqbrowser
Requires-Dist: AFQ-Browser (>=0.3) ; extra == 'afqbrowser'
Provides-Extra: all
Requires-Dist: docutils (==0.15.2) ; extra == 'all'
Requires-Dist: sphinx ; extra == 'all'
Requires-Dist: pytest (==6.0.1) ; extra == 'all'
Requires-Dist: pytest-cov (==2.10.0) ; extra == 'all'
Requires-Dist: flake8 ; extra == 'all'
Requires-Dist: sphinx-gallery ; extra == 'all'
Requires-Dist: sphinx-rtd-theme ; extra == 'all'
Requires-Dist: numpydoc (==1.2) ; extra == 'all'
Requires-Dist: sphinx-autoapi ; extra == 'all'
Requires-Dist: rapidfuzz ; extra == 'all'
Requires-Dist: xvfbwrapper (==0.2.9) ; extra == 'all'
Requires-Dist: moto (>=3.0.0) ; extra == 'all'
Requires-Dist: pip-conflict-checker (>=0.6.0) ; extra == 'all'
Requires-Dist: pydata-sphinx-theme ; extra == 'all'
Requires-Dist: fury (==0.8.0) ; extra == 'all'
Requires-Dist: ipython (<=7.20.0,>=7.13.0) ; extra == 'all'
Requires-Dist: fslpy ; extra == 'all'
Requires-Dist: h5py ; extra == 'all'
Requires-Dist: AFQ-Browser (>=0.3) ; extra == 'all'
Requires-Dist: pingouin (>=0.3) ; extra == 'all'
Requires-Dist: seaborn (>=0.11.0) ; extra == 'all'
Provides-Extra: dev
Requires-Dist: docutils (==0.15.2) ; extra == 'dev'
Requires-Dist: sphinx ; extra == 'dev'
Requires-Dist: pytest (==6.0.1) ; extra == 'dev'
Requires-Dist: pytest-cov (==2.10.0) ; extra == 'dev'
Requires-Dist: flake8 ; extra == 'dev'
Requires-Dist: sphinx-gallery ; extra == 'dev'
Requires-Dist: sphinx-rtd-theme ; extra == 'dev'
Requires-Dist: numpydoc (==1.2) ; extra == 'dev'
Requires-Dist: sphinx-autoapi ; extra == 'dev'
Requires-Dist: rapidfuzz ; extra == 'dev'
Requires-Dist: xvfbwrapper (==0.2.9) ; extra == 'dev'
Requires-Dist: moto (>=3.0.0) ; extra == 'dev'
Requires-Dist: pip-conflict-checker (>=0.6.0) ; extra == 'dev'
Requires-Dist: pydata-sphinx-theme ; extra == 'dev'
Provides-Extra: fsl
Requires-Dist: fslpy ; extra == 'fsl'
Provides-Extra: fury
Requires-Dist: fury (==0.8.0) ; extra == 'fury'
Requires-Dist: xvfbwrapper (==0.2.9) ; extra == 'fury'
Requires-Dist: ipython (<=7.20.0,>=7.13.0) ; extra == 'fury'
Provides-Extra: itk
Requires-Dist: h5py ; extra == 'itk'
Provides-Extra: plot
Requires-Dist: pingouin (>=0.3) ; extra == 'plot'
Requires-Dist: seaborn (>=0.11.0) ; extra == 'plot'
Requires-Dist: ipython (<=7.20.0,>=7.13.0) ; extra == 'plot'

# pyAFQ
Automated Fiber Quantification ... in Python.

For details, see [Documentation](https://yeatmanlab.github.io/pyAFQ)

For further analysis of results, see [AFQ-Insight](https://github.com/richford/AFQ-Insight)

## Citing _pyAFQ_

If you use _pyAFQ_ in a scientific publication, please cite our paper:

Kruper, J., Yeatman, J. D., Richie-Halford, A., Bloom, D., Grotheer, M., Caffarra, S., Kiar, G., Karipidis, I. I., Roy, E., Chandio, B. Q., Garyfallidis, E., & Rokem, A.
[Evaluating the Reliability of Human Brain White Matter Tractometry](https://doi.org/10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669).
DOI:10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669

```
@article {Kruper2021-xb,
  title     = "Evaluating the reliability of human brain white matter
               tractometry",
  author    = "Kruper, John and Yeatman, Jason D and Richie-Halford, Adam and
               Bloom, David and Grotheer, Mareike and Caffarra, Sendy and Kiar,
               Gregory and Karipidis, Iliana I and Roy, Ethan and Chandio,
               Bramsh Q and Garyfallidis, Eleftherios and Rokem, Ariel",
  journal   = "Apert Neuro",
  publisher = "Organization for Human Brain Mapping",
  volume    =  1,
  number    =  1,
  month     =  nov,
  year      =  2021,
  doi       =  10.52294/e6198273-b8e3-4b63-babb-6e6b0da10669,
}
```
