.gitignore
.mailmap
.pep8speaks.yml
.zenodo.json
CHANGES.rst
LICENSE
Makefile
README.md
aws_credentials.sh
pyafq_cli.json
pyproject.toml
requirements-dev.txt
requirements.txt
setup.py
tox.ini
.github/CONTRIBUTING.md
.github/workflows/docbuild.yml
.github/workflows/publish-to-test-pypi.yml
.github/workflows/test.yml
.maintenance/update_changes.sh
.maintenance/update_zenodo.py
AFQ/__init__.py
AFQ/_fixes.py
AFQ/_meta.py
AFQ/api.py
AFQ/csd.py
AFQ/data.py
AFQ/dki.py
AFQ/dti.py
AFQ/registration.py
AFQ/segmentation.py
AFQ/tractography.py
AFQ/version.py
AFQ/viz.py
AFQ/tests/__init__.py
AFQ/tests/test_api.py
AFQ/tests/test_csd.py
AFQ/tests/test_data.py
AFQ/tests/test_dki.py
AFQ/tests/test_dti.py
AFQ/tests/test_registration.py
AFQ/tests/test_scripts.py
AFQ/tests/test_segmentation.py
AFQ/tests/test_tractography.py
AFQ/utils/__init__.py
AFQ/utils/bin.py
AFQ/utils/models.py
AFQ/utils/parallel.py
AFQ/utils/streamlines.py
AFQ/utils/testing.py
AFQ/utils/volume.py
AFQ/utils/tests/__init__.py
AFQ/utils/tests/test_parallel.py
AFQ/utils/tests/test_streamlines.py
bin/pyAFQ
bin/pyAFQ_dki
bin/pyAFQ_dki_predict
bin/pyAFQ_dkimicro
bin/pyAFQ_dti
bin/pyAFQ_dti_predict
bin/pyAFQ_mdki
docs/Makefile
docs/upload-gh-pages.sh
docs/source/conf.py
docs/source/contributing.rst
docs/source/getting_help.rst
docs/source/index.rst
docs/source/installation_guide.rst
docs/source/usage.rst
docs/source/_static/BDE_Banner_revised20160211-01.jpg
docs/source/_static/eScience_Logo_HR.png
docs/source/_static/escience-logo.png
docs/source/_templates/layout.html
examples/README.txt
examples/cloudknot_recobundles.ipynb
examples/cloudknot_waypoint.ipynb
examples/plot_afq_api.py
examples/plot_recobundles.py
examples/plot_tract_profile.py
pyAFQ.egg-info/PKG-INFO
pyAFQ.egg-info/SOURCES.txt
pyAFQ.egg-info/dependency_links.txt
pyAFQ.egg-info/requires.txt
pyAFQ.egg-info/top_level.txt