Metadata-Version: 2.2
Name: py-lmd
Version: 1.3.1
Summary: Read, Modify and Create new shape files for the Leica LMD6 & LMD7
Author: Georg Wallmann, Sophia Maedler, Niklas Schmacke
Maintainer-email: Georg Wallmann <wallmann@biochem.mpg.de>, Sophia Maedler <maedler@biochem.mpg.de>
License: MIT License
        
        Copyright (c) 2021 Georg Wallmann
        
        Permission is hereby granted, free of charge, to any person obtaining a copy
        of this software and associated documentation files (the "Software"), to deal
        in the Software without restriction, including without limitation the rights
        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
        copies of the Software, and to permit persons to whom the Software is
        furnished to do so, subject to the following conditions:
        
        The above copyright notice and this permission notice shall be included in all
        copies or substantial portions of the Software.
        
        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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        SOFTWARE.
        
Project-URL: Homepage, https://github.com/MannLabs/py-lmd
Project-URL: Documentation, https://mannlabs.github.io/py-lmd/html/index.html
Project-URL: Source, https://github.com/MannLabs/py-lmd
Keywords: LMD
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python
Classifier: Intended Audience :: Science/Research
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Description-Content-Type: text/markdown
License-File: LICENSE
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![logo](https://github.com/MannLabs/py-lmd/assets/15019107/e7c619a2-69c9-4cb6-8723-fab94c8d3558)

Read, create and write cutting data for the Leica LMD6 & LMD7 microscope.
Build reproducible workflows to calibrate, import SVG files and convert single-cell segmentation masks.


Installation from Github
========================
py-lmd has been tested with **Python 3.9, 3.10 and 3.11**.
The py-lmd library can be installed via pip.

``` 
pip install py-lmd
```
  
Documentation
=============
The current documentation can be found under https://mannlabs.github.io/py-lmd/html/index.html.

Citing our Work
=================

py-lmd was developed by Georg Wallmann, Sophia Mädler and Niklas Schmacke in the labs of Veit Hornung and Matthias Mann. If you use our code please cite the [following manuscript](https://www.biorxiv.org/content/10.1101/2023.06.01.542416v1):

SPARCS, a platform for genome-scale CRISPR screening for spatial cellular phenotypes
Niklas Arndt Schmacke, Sophia Clara Maedler, Georg Wallmann, Andreas Metousis, Marleen Berouti, Hartmann Harz, Heinrich Leonhardt, Matthias Mann, Veit Hornung
bioRxiv 2023.06.01.542416; doi: https://doi.org/10.1101/2023.06.01.542416


