# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# Virtual environments
venv/
env/
ENV/
.venv

# Testing
.pytest_cache/
.coverage
htmlcov/
.tox/
coverage.xml
*.cover

# IDEs
.vscode/
.idea/
*.swp
*.swo
*~

# OS
.DS_Store
Thumbs.db

# Project specific
data/
test_data/
*.bam
*.bam.bai
*.fa
*.fa.fai
*.vcf
*.maf
output/
results/

# Logs
*.log

# Temporary files
tmp/
temp/
