# 📚 gbcms Documentation Hub

## 🚀 Getting Started

* **[README.md](README.md)** - Main package overview and quick start
* **[Installation Guide](INSTALLATION.md)** - Complete setup instructions
* **[Quick Start](QUICKSTART.md)** - 5-minute tutorial
* **[FAQ](FAQ.md)** - Frequently asked questions

## 👥 User Guide

* **[CLI Features](CLI_FEATURES.md)** - Complete command-line reference
* **[Input & Output Formats](INPUT_OUTPUT.md)** - Supported file formats and specifications
* **[Parallelization Guide](PARALLELIZATION_GUIDE.md)** - Multi-threading and performance optimization
* **[Docker Guide](DOCKER_GUIDE.md)** - Containerization and deployment

## ⚡ Advanced Features

* **[Advanced Features](ADVANCED_FEATURES.md)** - Pydantic, Numba, and performance optimization
* **[Fast VCF Parsing (cyvcf2)](CYVCF2_SUPPORT.md)** - High-performance VCF processing

## 🔧 Development

* **[Contributing Guide](../../../CONTRIBUTING.md)** - Development workflow
* **[Package Structure](PACKAGE_STRUCTURE.md)** - Understanding the codebase organization
* **[Testing Guide](TESTING_GUIDE.md)** - Testing strategy

## 📚 Reference

* **[Architecture Overview](ARCHITECTURE.md)** - Module relationships and design decisions
* **[C++ Feature Comparison](CPP_FEATURE_COMPARISON.md)** - Python vs C++ comparison
* **[Complete Features](COMPLETE_FEATURES_SUMMARY.md)** - Feature completeness matrix

## 🐳 Docker & Deployment

* **[Docker Summary](DOCKER_SUMMARY.md)** - Quick reference for Docker usage

---

*This documentation is maintained for gbcms v2.0.0 - Python 3.11+ implementation*
